Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOD97_RS10125 Genome accession   NZ_CP087569
Coordinates   1950223..1950780 (+) Length   185 a.a.
NCBI ID   WP_002822676.1    Uniprot ID   A0AAJ2P509
Organism   Oenococcus oeni strain SD-2a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1945223..1955780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD97_RS10105 (LOD97_10095) - 1946913..1947080 (+) 168 WP_155716938.1 hypothetical protein -
  LOD97_RS10110 (LOD97_10100) nadE 1947131..1947958 (-) 828 WP_002817807.1 ammonia-dependent NAD(+) synthetase -
  LOD97_RS10115 (LOD97_10105) - 1948189..1949655 (+) 1467 WP_002817808.1 multicopper oxidase family protein -
  LOD97_RS10120 (LOD97_10110) rpsF 1949774..1950214 (+) 441 WP_002817809.1 30S ribosomal protein S6 -
  LOD97_RS10125 (LOD97_10115) ssb 1950223..1950780 (+) 558 WP_002822676.1 single-stranded DNA-binding protein Machinery gene
  LOD97_RS10130 (LOD97_10120) rpsR 1950803..1951123 (+) 321 WP_002817487.1 30S ribosomal protein S18 -
  LOD97_RS10135 (LOD97_10125) - 1951226..1953283 (+) 2058 WP_002817488.1 DHH family phosphoesterase -
  LOD97_RS10140 (LOD97_10130) rplI 1953297..1953752 (+) 456 WP_002817489.1 50S ribosomal protein L9 -
  LOD97_RS10145 (LOD97_10135) dnaB 1953758..1955215 (+) 1458 WP_002817943.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20219.88 Da        Isoelectric Point: 4.5093

>NTDB_id=630092 LOD97_RS10125 WP_002822676.1 1950223..1950780(+) (ssb) [Oenococcus oeni strain SD-2a]
MINRVVLVGRLTRDVELRYTGNGDAVGSFTIAVERNFTNRAGEREADFISCVIWRKPAENFANFTGKGAMVGVEGRIQTR
TYDNNQGQKVYVTEVVVDNFQLLETRAQSEARRSQNGSAGNMGNTAPQSQSNFNIPNQQSNPFDSQFNNNASSASTNSQT
SSSSSPFNTDAGNDSLDISDDDLPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=630092 LOD97_RS10125 WP_002822676.1 1950223..1950780(+) (ssb) [Oenococcus oeni strain SD-2a]
ATGATCAATCGAGTTGTATTAGTTGGTAGATTAACCCGCGACGTTGAGTTGCGTTATACAGGAAACGGTGATGCAGTTGG
ATCATTTACAATCGCTGTCGAACGAAATTTCACGAATCGCGCTGGTGAGCGCGAGGCTGATTTTATCAGTTGCGTGATTT
GGCGTAAACCTGCCGAAAACTTTGCCAATTTTACAGGTAAAGGAGCAATGGTTGGCGTCGAAGGCCGAATTCAGACCAGA
ACTTACGATAATAATCAGGGACAGAAGGTTTATGTGACCGAGGTTGTTGTTGATAATTTCCAATTATTGGAGACACGTGC
TCAATCTGAAGCGCGTCGTTCGCAAAATGGCAGTGCTGGTAACATGGGGAATACCGCTCCGCAAAGTCAGAGTAATTTCA
ATATTCCTAATCAACAGTCAAATCCATTTGATTCGCAATTCAACAATAATGCGAGTTCCGCTTCAACTAATAGTCAAACG
AGTTCTTCCAGCAGTCCTTTTAATACAGACGCCGGGAATGATTCGCTTGATATCTCGGATGATGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.452

100

0.568
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.568

100

0.476