Detailed information NTG0062980

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: N596_RS08620
• Genome accession: NC_022584
• Coordinates: 1813958..1816063 (+)
• Length: 701 a.a.
• NCBI ID: WP_023027642.1
• Uniprot ID: -
• Organism: Streptococcus ilei
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1808958..1821063

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N596_RS08595 (N596_08845)	-	1809199..1810200 (+)	1002	WP_023027637.1	uroporphyrinogen decarboxylase family protein	-
N596_RS08600 (N596_08850)	-	1810228..1811106 (+)	879	WP_023027638.1	transporter substrate-binding domain-containing protein	-
N596_RS08605 (N596_08855)	-	1811173..1811865 (+)	693	WP_023027639.1	amino acid ABC transporter permease	-
N596_RS08610 (N596_08860)	-	1811869..1812555 (+)	687	WP_023027640.1	amino acid ABC transporter permease	-
N596_RS08615 (N596_08865)	-	1812575..1813339 (+)	765	WP_023027641.1	amino acid ABC transporter ATP-binding protein	-
N596_RS08620 (N596_08870)	clpC	1813958..1816063 (+)	2106	WP_023027642.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
N596_RS08625 (N596_08875)	-	1816354..1816599 (+)	246	WP_023022151.1	hypothetical protein	-
N596_RS08630 (N596_08880)	yajC	1816787..1817116 (+)	330	WP_023027643.1	preprotein translocase subunit YajC	-
N596_RS08635 (N596_08885)	-	1817248..1817997 (+)	750	WP_023027644.1	isoprenyl transferase	-
N596_RS08640 (N596_08890)	-	1818009..1818812 (+)	804	WP_023027645.1	phosphatidate cytidylyltransferase	-
N596_RS08645 (N596_08895)	eeP	1818854..1820113 (+)	1260	WP_023022155.1	RIP metalloprotease RseP	Regulator

Sequence

Protein

• Length: 701 a.a.
• Molecular weight: 77500.38 Da
• Isoelectric Point: 4.7507

>NTDB_id=62980 N596_RS08620 WP_023027642.1 1813958..1816063(+) (clpC) [Streptococcus ilei]
MNNNFNNMDDLFNQLMGNMGGFRSESRRYMINGREVTPEEFAIYRQTGQLPSDGGEQAQHSQAKGMKQDGILAKLGRNLT
EEAREGKLDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEAGT
QYRGSFEENIQNMIQEVKAMGNVILFFDEIHQILGAGSTGDGQGSKGLADILKPALSRGELTVIGATTQDEYRNTILKNA
ALARRFNEVKVNAPSAEDTFKILQGIRDLYEKHHNVVLPDEVLKAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQHPV
TDVHAVEHEIDEEKAKQEEAAAKEDYEAALKAKVRIEELEKKIANHTEDHKVTATINDVAESVERMTGIPVSQMGATDIE
RLKDMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEY
SDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIA
TSNAGFGYEANLTEDADKPELMDRLKPFFRPEFLNRFNAVIEFSHLSKEDLSKIVDLMLAEVNKTLAKKDIDLTVTDAAK
EYMTEEGYDEVMGVRPLRRVVEQQIRDKVTDFHLDNLDAKHLLADMEDGELVIKENGTSEE

Nucleotide

• Length: 2106 bp

>NTDB_id=62980 N596_RS08620 WP_023027642.1 1813958..1816063(+) (clpC) [Streptococcus ilei]
ATGAACAACAACTTTAACAATATGGACGATCTTTTCAATCAACTAATGGGAAACATGGGTGGTTTCCGTTCTGAAAGCCG
TCGCTACATGATCAATGGTCGTGAAGTGACACCAGAAGAATTCGCTATTTACCGCCAAACAGGTCAACTTCCATCTGATG
GTGGCGAACAAGCTCAACACAGCCAAGCTAAAGGTATGAAGCAAGATGGGATTCTTGCGAAGCTTGGTCGCAACTTGACC
GAAGAAGCACGTGAAGGAAAGTTGGATCCGGTCATTGGACGTAACAAAGAAATTCAAGAAACAGCTGAAATCTTGTCTCG
TCGTACCAAGAACAATCCTGTCCTTGTCGGGGATGCAGGTGTTGGTAAGACGGCTGTTGTAGAAGGATTGGCTCAAGCTA
TCGTGAACGGTGATGTTCCAGCAGCTATCAAGAACAAAGAAATCATCTCGATTGATATTTCTGGTCTAGAAGCTGGTACG
CAATACCGTGGTAGCTTCGAAGAAAATATCCAAAATATGATCCAAGAAGTCAAAGCAATGGGCAATGTCATCCTCTTCTT
CGATGAAATTCACCAAATTCTTGGTGCAGGTAGCACAGGAGATGGACAAGGATCTAAAGGTCTTGCGGATATCTTGAAAC
CAGCTCTTTCTCGTGGTGAATTAACCGTGATTGGGGCAACTACTCAAGATGAATACCGTAACACCATCTTGAAAAATGCT
GCCCTTGCTCGTCGTTTCAACGAAGTCAAGGTCAATGCTCCTTCTGCTGAAGATACCTTCAAGATTCTCCAAGGAATCCG
TGATCTTTATGAAAAACACCACAATGTTGTCTTGCCAGATGAAGTCTTGAAAGCAGCAGTTGATTATTCTGTTCAATACA
TTCCACAACGGAGCTTGCCTGATAAGGCCATCGACTTGGTTGATGTGACAGCTGCTCACTTGGCAGCTCAACATCCAGTA
ACAGATGTGCACGCAGTGGAACATGAAATTGATGAAGAAAAAGCAAAACAAGAAGAAGCTGCAGCTAAAGAAGATTACGA
AGCAGCTTTGAAAGCAAAAGTTCGCATCGAAGAACTGGAAAAGAAAATTGCTAACCATACGGAAGACCATAAAGTAACAG
CAACAATCAACGATGTGGCTGAATCAGTAGAACGGATGACGGGTATTCCAGTTTCTCAAATGGGAGCAACCGATATCGAA
CGCTTGAAAGATATGGGACACCGTTTGCAAACGAAAGTTATCGGTCAAGACAAGGCCGTTGAAGCCGTTGCCAAAGCGAT
TCGTCGGAACCGTGCAGGATTTGATGAAGGCAACCGTCCAATCGGTAGCTTCCTCTTCGTCGGACCTACTGGTGTCGGTA
AGACTGAGTTGGCTAAACAATTGGCCCTTGATATGTTTGGTACCAAAGATGCCATCATCCGTTTGGACATGTCAGAATAC
AGCGATCGTACAGCCGTCTCTAAGTTGATTGGTACCACTGCCGGTTATGTTGGTTACGATGATAACAACAATACCTTGAC
AGAACGTGTACGTCGCAATCCTTACTCTATCGTCCTTCTTGATGAGATTGAAAAGGCGGATCCTCAAGTGATCACCCTGC
TCCTTCAAGTCTTGGATGATGGTCGTTTGACAGATGGTCAAGGAAACACCGTTAACTTCAAGAATACGGTCATTATCGCT
ACTTCAAACGCTGGCTTTGGTTATGAGGCTAACTTGACAGAAGATGCTGACAAACCAGAACTCATGGATCGTTTGAAACC
ATTCTTCCGTCCAGAATTCCTAAACCGCTTCAATGCTGTCATCGAATTCTCACACTTGAGCAAGGAAGACCTTTCTAAGA
TTGTTGACTTGATGTTAGCAGAAGTGAATAAAACGCTTGCTAAGAAAGACATTGATTTGACAGTTACCGATGCAGCTAAA
GAATATATGACTGAAGAAGGATACGATGAAGTCATGGGTGTTCGTCCACTCCGTCGTGTGGTTGAACAACAAATCCGTGA
TAAGGTGACTGACTTCCACTTGGATAACCTTGACGCAAAACACTTGTTGGCTGATATGGAAGATGGAGAATTGGTTATTA
AAGAGAATGGAACCTCAGAAGAATAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (255-349)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (606-676)

• AAA domain (Cdc48 subfamily) (AAA_2) (439-599)

• ATPase family associated with various cellular activities (AAA) (AAA) (114-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.222	100	0.484
clpE	Streptococcus mutans UA159	47.585	100	0.478
clpE	Streptococcus pneumoniae TIGR4	48.913	91.869	0.449
clpE	Streptococcus pneumoniae Rx1	48.913	91.869	0.449
clpE	Streptococcus pneumoniae D39	48.913	91.869	0.449
clpE	Streptococcus pneumoniae R6	48.913	91.869	0.449
clpC	Bacillus subtilis subsp. subtilis str. 168	45.846	92.725	0.425
clpC	Streptococcus pneumoniae D39	42.813	93.295	0.399
clpC	Streptococcus pneumoniae Rx1	42.813	93.295	0.399
clpC	Streptococcus pneumoniae TIGR4	42.661	93.295	0.398
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.218	90.442	0.391
clpC	Streptococcus thermophilus LMD-9	43.598	88.017	0.384
clpC	Streptococcus thermophilus LMG 18311	43.296	88.302	0.382
clpC	Streptococcus mutans UA159	42.395	88.16	0.374