Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   NQS38_RS04385 Genome accession   NZ_CP104496
Coordinates   943407..944054 (+) Length   215 a.a.
NCBI ID   WP_011000159.1    Uniprot ID   Q8Y2Y9
Organism   Ralstonia pseudosolanacearum strain Gj707     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 938407..949054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQS38_RS04355 (NQS38_04355) - 938594..939247 (+) 654 WP_011000153.1 BON domain-containing protein -
  NQS38_RS04360 (NQS38_04360) - 939293..939823 (+) 531 WP_028860093.1 flavodoxin family protein -
  NQS38_RS04365 (NQS38_04365) - 939907..940233 (+) 327 WP_226951815.1 TraR/DksA family transcriptional regulator -
  NQS38_RS04370 (NQS38_04370) - 940266..940913 (+) 648 WP_011000156.1 BON domain-containing protein -
  NQS38_RS04375 (NQS38_04375) - 940969..941769 (-) 801 WP_118888068.1 helix-turn-helix domain-containing protein -
  NQS38_RS04380 (NQS38_04380) - 942028..943404 (+) 1377 WP_016722509.1 PAS domain-containing sensor histidine kinase -
  NQS38_RS04385 (NQS38_04385) letA 943407..944054 (+) 648 WP_011000159.1 response regulator transcription factor Regulator
  NQS38_RS04390 (NQS38_04390) - 944158..944652 (-) 495 WP_038938152.1 hypothetical protein -
  NQS38_RS04395 (NQS38_04395) - 944892..945929 (+) 1038 WP_011000161.1 zinc-dependent alcohol dehydrogenase family protein -
  NQS38_RS04400 (NQS38_04400) - 945975..947792 (+) 1818 WP_038938154.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23909.47 Da        Isoelectric Point: 6.2267

>NTDB_id=629779 NQS38_RS04385 WP_011000159.1 943407..944054(+) (letA) [Ralstonia pseudosolanacearum strain Gj707]
MIRVMIADDHAVMRDGVRHILERAGDFEVACEASDGTQVLQLVRDHQPQVIVLDLSMPGRSGLELLRQLHDDHPTVRVLV
LTMHAEEQYVARAFRAGAAAYLTKESAATELVTALQKVARGGTYVSPPMAEKLAHSLGETSDEAAHMRLSDREMEVYRRL
VLGEPLTEIAASLCVSAKTISTYKMRLMDKLQLSSEAALVRYAIRHRLFSDDDTL

Nucleotide


Download         Length: 648 bp        

>NTDB_id=629779 NQS38_RS04385 WP_011000159.1 943407..944054(+) (letA) [Ralstonia pseudosolanacearum strain Gj707]
ATGATCCGCGTGATGATTGCCGACGATCACGCCGTGATGCGCGATGGCGTGCGCCATATTCTGGAGCGCGCCGGAGATTT
CGAGGTTGCGTGCGAAGCCTCTGACGGCACTCAGGTATTGCAACTGGTGCGTGACCACCAGCCACAGGTGATCGTGCTTG
ACCTGTCAATGCCGGGGCGCAGCGGGCTGGAGCTGTTGCGTCAGTTACATGACGATCATCCGACGGTGCGCGTGTTGGTG
CTGACGATGCACGCAGAGGAGCAGTATGTGGCGCGCGCCTTCCGCGCAGGGGCGGCAGCCTACCTGACCAAGGAAAGTGC
CGCGACTGAATTGGTCACGGCGCTGCAGAAGGTGGCACGCGGTGGTACCTATGTCAGTCCACCCATGGCCGAGAAGCTTG
CGCACAGCCTGGGCGAGACCAGCGATGAGGCCGCGCACATGCGCCTGTCTGATCGCGAGATGGAGGTCTATCGCCGGCTA
GTGCTGGGTGAACCGCTCACGGAGATTGCCGCCAGCCTGTGTGTGAGCGCCAAGACCATTAGCACCTACAAGATGCGGTT
GATGGACAAGCTGCAGTTGTCTAGTGAGGCCGCACTCGTGCGCTACGCCATTCGTCATCGCTTGTTCTCTGACGACGACA
CCCTGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y2Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

39.048

97.674

0.381
  letA Legionella pneumophila strain ERS1305867

39.048

97.674

0.381