Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   N1H43_RS12990 Genome accession   NZ_CP104442
Coordinates   2653277..2653933 (-) Length   218 a.a.
NCBI ID   WP_000611337.1    Uniprot ID   -
Organism   Escherichia coli strain HBUT-L     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2648277..2658933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1H43_RS12960 (N1H43_12965) yecA 2649529..2650194 (-) 666 WP_000847902.1 UPF0149 family protein YecA -
  N1H43_RS12980 (N1H43_12985) pgsA 2650843..2651391 (-) 549 WP_001160188.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N1H43_RS12985 (N1H43_12990) uvrC 2651448..2653280 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  N1H43_RS12990 (N1H43_12995) letA 2653277..2653933 (-) 657 WP_000611337.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  N1H43_RS23960 - 2654075..2654146 (+) 72 Protein_2546 transcriptional regulator -
  N1H43_RS12995 (N1H43_13000) yecU 2654229..2654405 (+) 177 WP_000590347.1 protein YecU -
  N1H43_RS13000 (N1H43_13005) yecF 2654392..2654616 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  N1H43_RS13005 (N1H43_13010) sdiA 2654683..2655405 (-) 723 WP_001154279.1 transcriptional regulator SdiA -
  N1H43_RS13010 (N1H43_13015) tcyN 2655635..2656387 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  N1H43_RS13015 (N1H43_13020) tcyL 2656384..2657052 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  N1H43_RS13020 (N1H43_13025) dcyD 2657067..2658053 (-) 987 WP_001128219.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23922.68 Da        Isoelectric Point: 6.9614

>NTDB_id=629404 N1H43_RS12990 WP_000611337.1 2653277..2653933(-) (letA) [Escherichia coli strain HBUT-L]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLETTRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=629404 N1H43_RS12990 WP_000611337.1 2653277..2653933(-) (letA) [Escherichia coli strain HBUT-L]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGACGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486