Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   N4P55_RS26765 Genome accession   NZ_CP104408
Coordinates   5853055..5853420 (-) Length   121 a.a.
NCBI ID   WP_014720320.1    Uniprot ID   A0A0J8G142
Organism   Pseudomonas fluorescens strain Ant01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5848055..5858420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4P55_RS26755 (N4P55_26770) - 5850470..5852521 (-) 2052 WP_064454539.1 methyl-accepting chemotaxis protein -
  N4P55_RS26760 (N4P55_26775) - 5852518..5853042 (-) 525 WP_064454540.1 chemotaxis protein CheW -
  N4P55_RS26765 (N4P55_26780) pilH 5853055..5853420 (-) 366 WP_014720320.1 twitching motility response regulator PilH Machinery gene
  N4P55_RS26770 (N4P55_26785) pilG 5853467..5853874 (-) 408 WP_003176671.1 twitching motility response regulator PilG Regulator
  N4P55_RS26775 (N4P55_26790) gshB 5854114..5855067 (+) 954 WP_064454541.1 glutathione synthase -
  N4P55_RS26780 (N4P55_26795) - 5855145..5856050 (+) 906 WP_262666471.1 energy transducer TonB -
  N4P55_RS26785 (N4P55_26800) - 5856118..5856687 (+) 570 WP_057022840.1 YqgE/AlgH family protein -
  N4P55_RS26790 (N4P55_26805) ruvX 5856687..5857124 (+) 438 WP_003213744.1 Holliday junction resolvase RuvX -
  N4P55_RS26795 (N4P55_26810) pyrR 5857208..5857714 (+) 507 WP_064454543.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13227.23 Da        Isoelectric Point: 4.9105

>NTDB_id=629359 N4P55_RS26765 WP_014720320.1 5853055..5853420(-) (pilH) [Pseudomonas fluorescens strain Ant01]
MARVLIVDDSPTEMYKLTGMLEKHGHQVLKAENGADGVALARQEKPDAVLMDIVMPGLNGFQATRQLSKEPETNGIPIII
ITTKDQETDKIWGARQGAKDYLTKPVDEETLIATLNKVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=629359 N4P55_RS26765 WP_014720320.1 5853055..5853420(-) (pilH) [Pseudomonas fluorescens strain Ant01]
ATGGCACGCGTTCTGATCGTCGACGATTCGCCGACTGAAATGTACAAACTGACCGGCATGCTGGAAAAGCATGGGCATCA
GGTCCTCAAGGCCGAAAATGGCGCTGACGGCGTGGCGCTGGCCCGTCAGGAAAAACCCGATGCGGTCCTGATGGACATCG
TGATGCCGGGCCTCAATGGCTTCCAGGCAACGCGTCAGCTGTCCAAGGAGCCGGAAACCAACGGCATTCCGATCATCATC
ATCACTACCAAGGATCAGGAAACCGACAAGATCTGGGGCGCGCGCCAGGGCGCCAAGGACTACCTGACCAAACCGGTTGA
CGAAGAAACCCTGATCGCCACCCTGAACAAGGTGCTGGCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8G142

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364