Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   N4P55_RS25780 Genome accession   NZ_CP104408
Coordinates   5630409..5631038 (-) Length   209 a.a.
NCBI ID   WP_064454381.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain Ant01     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 5625409..5636038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4P55_RS25760 (N4P55_25775) - 5625762..5626586 (-) 825 WP_028618151.1 ABC transporter permease -
  N4P55_RS25765 (N4P55_25780) - 5626599..5627831 (-) 1233 WP_053258306.1 ABC transporter permease -
  N4P55_RS25770 (N4P55_25785) - 5627998..5629038 (-) 1041 WP_064454379.1 ABC transporter substrate-binding protein -
  N4P55_RS25775 (N4P55_25790) - 5629082..5630194 (-) 1113 WP_262666377.1 ABC transporter ATP-binding protein -
  N4P55_RS25780 (N4P55_25795) letA 5630409..5631038 (-) 630 WP_064454381.1 response regulator transcription factor Regulator
  N4P55_RS25785 (N4P55_25800) - 5631057..5633051 (-) 1995 WP_262666378.1 sensor histidine kinase -
  N4P55_RS25790 (N4P55_25805) - 5633129..5634103 (+) 975 WP_064454383.1 alpha/beta hydrolase family protein -
  N4P55_RS25795 (N4P55_25810) - 5634257..5635024 (-) 768 WP_064454384.1 TerB family tellurite resistance protein -
  N4P55_RS25800 (N4P55_25815) murU 5635026..5635703 (-) 678 WP_262666379.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22721.47 Da        Isoelectric Point: 6.7600

>NTDB_id=629356 N4P55_RS25780 WP_064454381.1 5630409..5631038(-) (letA) [Pseudomonas fluorescens strain Ant01]
MIRVLVAEDHTIVREGIKQLIGLAKDLQVVGEASNGEQLLETLRHVACEVVLLDISMPGVNGLEAIARIRALNNPPAILV
LSMHDEAQMAARALKVGAAGYATKDSDPALLLTAIRKVAAGGRYIDPDLADRMVFEVGLTDTRPLHSLLSEREFSVFERL
AQGANVNDIAQQLALSSKTISTHKARLMQKLNITSLAELVKYAMEHKLL

Nucleotide


Download         Length: 630 bp        

>NTDB_id=629356 N4P55_RS25780 WP_064454381.1 5630409..5631038(-) (letA) [Pseudomonas fluorescens strain Ant01]
GTGATTCGCGTATTGGTAGCCGAAGACCACACCATCGTCCGTGAAGGCATCAAGCAATTGATCGGCCTGGCCAAAGACCT
GCAAGTGGTGGGCGAGGCGAGTAACGGCGAGCAGTTGCTGGAGACCTTGCGCCATGTGGCGTGCGAGGTTGTGTTGCTGG
ATATCTCGATGCCGGGTGTGAATGGGCTGGAAGCCATTGCGCGCATCCGTGCACTGAATAACCCGCCGGCGATCCTGGTG
TTGTCCATGCACGATGAAGCGCAAATGGCCGCCCGAGCCTTGAAAGTCGGTGCGGCGGGGTATGCGACCAAGGACAGCGA
CCCGGCCCTGTTGCTGACGGCAATTCGCAAAGTCGCGGCGGGCGGGCGCTATATCGACCCGGACCTGGCTGACCGCATGG
TGTTTGAAGTCGGCCTGACGGATACGCGGCCTCTGCATTCGTTGCTCTCGGAGCGCGAGTTTTCGGTGTTCGAGCGCCTG
GCCCAGGGCGCCAACGTCAATGACATCGCGCAGCAACTGGCGCTGAGCAGCAAGACCATCAGCACCCACAAGGCGCGCCT
GATGCAAAAGCTCAATATCACCTCCCTGGCCGAATTGGTGAAGTACGCCATGGAACATAAGCTGTTGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

37.799

100

0.378
  letA Legionella pneumophila strain ERS1305867

37.799

100

0.378