Detailed information NTG0629321

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LOZ86_RS14375
• Genome accession: NZ_CP087392
• Coordinates: 3196520..3197365 (-)
• Length: 281 a.a.
• NCBI ID: WP_230242182.1
• Uniprot ID: -
• Organism: Pectobacterium parvum strain FN20211
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3191520..3202365

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOZ86_RS14350 (LOZ86_14350)	-	3191588..3192358 (-)	771	WP_039484258.1	ABC transporter ATP-binding protein	-
LOZ86_RS14355 (LOZ86_14355)	-	3192360..3193379 (-)	1020	WP_080728062.1	iron ABC transporter permease	-
LOZ86_RS14360 (LOZ86_14360)	-	3193376..3194440 (-)	1065	WP_039512435.1	ABC transporter substrate-binding protein	-
LOZ86_RS14365 (LOZ86_14365)	-	3194917..3195942 (+)	1026	WP_039512434.1	LLM class flavin-dependent oxidoreductase	-
LOZ86_RS14370 (LOZ86_14370)	ypdK	3196300..3196374 (+)	75	WP_099606229.1	membrane protein YpdK	-
LOZ86_RS14375 (LOZ86_14375)	pilD	3196520..3197365 (-)	846	WP_230242182.1	A24 family peptidase	Machinery gene
LOZ86_RS14380 (LOZ86_14380)	-	3197459..3198205 (-)	747	WP_165708253.1	type II secretion system protein N	-
LOZ86_RS14385 (LOZ86_14385)	-	3198195..3198689 (-)	495	WP_165708251.1	type II secretion system protein M	-
LOZ86_RS14390 (LOZ86_14390)	gspL	3198686..3199963 (-)	1278	WP_230242183.1	type II secretion system protein GspL	-
LOZ86_RS14395 (LOZ86_14395)	gspK	3199960..3200946 (-)	987	WP_039484239.1	type II secretion system minor pseudopilin GspK	-
LOZ86_RS14400 (LOZ86_14400)	gspJ	3200943..3201593 (-)	651	WP_072012381.1	type II secretion system minor pseudopilin GspJ	-
LOZ86_RS14405 (LOZ86_14405)	gspI	3201596..3201958 (-)	363	WP_039484234.1	type II secretion system minor pseudopilin GspI	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31396.30 Da
• Isoelectric Point: 5.7643

>NTDB_id=629321 LOZ86_RS14375 WP_230242182.1 3196520..3197365(-) (pilD) [Pectobacterium parvum strain FN20211]
MDDFREFAQLFPAWWFGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELEAGMADSDPDTRYNLCWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLTSGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWIGLLFNLSETFVPLNDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLVWRGLRKEDTAKPLAFGPWLAMGGVFSVIMNGFNL

Nucleotide

• Length: 846 bp

>NTDB_id=629321 LOZ86_RS14375 WP_230242182.1 3196520..3197365(-) (pilD) [Pectobacterium parvum strain FN20211]
GTGGACGATTTCAGGGAATTCGCACAGCTGTTTCCGGCGTGGTGGTTTGGGGCGCTGGGCGTGTTGGGGTTGATTGTTGG
CAGCTTTCTGAACGTGGTGATTTACCGCTTGCCGATTATGTTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAGCGG
GCATGGCCGATTCCGATCCTGATACGCGCTACAACCTGTGTTGGCCGCCTTCGTCTTGCCCGCACTGCCAGCAGGCTATT
GCAGTAAAAGATAATATCCCGCTATTCAGCTGGTTGTGGTTGCGAGGCCGCTCCCGCTGCTGTCATCAATCGGTGTCTGT
GCAATACCCGCTAGTGGAAGTCATCACTATGCTGGCTTTTCTGACGTCGGGTTTGCTCTGGTTGCCCGGTATGGCGCTGT
GGGGGGCGTTGATTCTGCTGTCCTTCCTGCTGGTGCTGACCGTGATTGATATCAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATTGGGCTGCTGTTTAATCTGTCGGAGACATTTGTCCCATTGAATGATGCTGTCGTTGGCGC
GATGGCCGGTTATTTATCTCTGTGGCTACTTTATTGGGTATTCAAATACGCGACGGGCAAAGAGGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGTGCCTGGCTGGGTTGGCAGGCGTTGCCGAATCTGGTTTTGGTGGCGGCGCTGAGC
GGGTTGGTCGTTACTCTCGTCTGGCGCGGGTTGCGTAAAGAGGATACGGCTAAACCGCTGGCATTTGGCCCCTGGCTGGC
AATGGGCGGCGTGTTCAGCGTGATAATGAACGGATTCAATCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.185	96.441	0.484
pilD	Vibrio campbellii strain DS40M4	45.455	97.865	0.445
pilD	Neisseria gonorrhoeae MS11	47.126	92.883	0.438
pilD	Acinetobacter baumannii D1279779	42.125	97.153	0.409
pilD	Acinetobacter nosocomialis M2	41.758	97.153	0.406