Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   N4P55_RS11030 Genome accession   NZ_CP104408
Coordinates   2380107..2380748 (+) Length   213 a.a.
NCBI ID   WP_017530522.1    Uniprot ID   A0A9X1C6L0
Organism   Pseudomonas fluorescens strain Ant01     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2375107..2385748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4P55_RS11000 (N4P55_11015) - 2375575..2376276 (+) 702 WP_262667533.1 NAD(P)H-dependent oxidoreductase -
  N4P55_RS11005 (N4P55_11020) - 2376338..2377417 (-) 1080 WP_262667534.1 3-deoxy-7-phosphoheptulonate synthase -
  N4P55_RS11010 (N4P55_11025) - 2378037..2378786 (+) 750 WP_221294415.1 carbon-nitrogen hydrolase family protein -
  N4P55_RS11015 (N4P55_11030) - 2378787..2379233 (+) 447 WP_064451814.1 GNAT family N-acetyltransferase -
  N4P55_RS11020 (N4P55_11035) - 2379269..2379508 (-) 240 WP_064451815.1 DNA-binding protein -
  N4P55_RS11025 (N4P55_11040) - 2379590..2379955 (+) 366 WP_064451816.1 helix-turn-helix domain-containing protein -
  N4P55_RS11030 (N4P55_11045) letA 2380107..2380748 (+) 642 WP_017530522.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  N4P55_RS11035 (N4P55_11050) uvrC 2380750..2382573 (+) 1824 WP_064451817.1 excinuclease ABC subunit UvrC -
  N4P55_RS11040 (N4P55_11055) pgsA 2382606..2383166 (+) 561 WP_053255497.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N4P55_RS11050 (N4P55_11065) - 2383701..2384540 (+) 840 WP_064451818.1 DNA/RNA non-specific endonuclease -
  N4P55_RS11055 (N4P55_11070) - 2384630..2384935 (-) 306 WP_064451819.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23132.01 Da        Isoelectric Point: 6.2456

>NTDB_id=629317 N4P55_RS11030 WP_017530522.1 2380107..2380748(+) (letA) [Pseudomonas fluorescens strain Ant01]
MIRVLVVDDHDLVRTGITRMLADIDGLQVVGQAESGEESLIKARELKPDVVLMDVKMPGIGGLGATTKLLRSHPDIKVVV
VTVCEEDPFPTRLLQAGAAGYLTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPTSDSPFDALSEREIQIALMI
VGCQKVQSISDKLCLSPKTVNTYRYRIFEKLAISSDVELTLLAVRHGMVDASA

Nucleotide


Download         Length: 642 bp        

>NTDB_id=629317 N4P55_RS11030 WP_017530522.1 2380107..2380748(+) (letA) [Pseudomonas fluorescens strain Ant01]
TTGATTAGGGTGCTAGTAGTCGATGACCATGATCTCGTTCGTACAGGCATTACACGAATGCTGGCTGACATCGATGGCCT
GCAAGTAGTCGGTCAGGCCGAGTCGGGGGAGGAGTCCCTGATCAAGGCCCGGGAGTTGAAACCCGATGTGGTTTTGATGG
ACGTCAAGATGCCTGGGATCGGCGGTCTTGGTGCCACTACCAAATTATTACGCAGCCACCCGGACATTAAAGTCGTGGTG
GTCACCGTGTGCGAGGAAGACCCGTTTCCCACGCGCCTTCTGCAGGCCGGAGCGGCCGGTTACTTGACCAAGGGCGCAGG
CCTGGCGGAGATGGTGCAAGCCATTCGCCTGGTATTTGCCGGCCAGCGGTATATCAGCCCGCAGATTGCCCAGCAGTTGG
CGATCAAATCCTTCCAGCCTACCAGTGACTCGCCGTTTGATGCGCTGTCGGAGCGTGAGATCCAGATCGCCTTGATGATC
GTCGGTTGCCAGAAAGTGCAGTCGATCTCCGATAAGCTGTGCCTGTCGCCAAAAACCGTCAACACCTACCGCTATCGCAT
TTTCGAGAAGCTCGCCATCAGCAGTGATGTTGAATTGACCCTGCTCGCGGTGCGTCACGGCATGGTGGACGCCAGCGCCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X1C6L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

98.592

0.545
  letA Legionella pneumophila strain ERS1305867

55.238

98.592

0.545