Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   N597_RS08880 Genome accession   NC_022582
Coordinates   1882431..1883192 (+) Length   253 a.a.
NCBI ID   WP_023024814.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1877431..1888192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS08855 (N597_09105) comE/comE2 1877932..1878684 (-) 753 WP_023024804.1 response regulator transcription factor Regulator
  N597_RS10645 (N597_09110) - 1878685..1880004 (-) 1320 WP_023024806.1 sensor histidine kinase -
  N597_RS10020 (N597_09115) - 1880004..1880147 (-) 144 WP_023024808.1 bacteriocin -
  N597_RS08870 (N597_09125) rlmH 1880505..1880984 (-) 480 WP_023024810.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  N597_RS08875 (N597_09130) htrA 1881187..1882365 (+) 1179 WP_023024812.1 S1C family serine protease Regulator
  N597_RS08880 (N597_09135) spo0J 1882431..1883192 (+) 762 WP_023024814.1 ParB/RepB/Spo0J family partition protein Regulator
  N597_RS08885 (N597_09140) dnaA 1883472..1884812 (+) 1341 WP_373364509.1 chromosomal replication initiator protein DnaA -
  N597_RS08890 (N597_09145) dnaN 1884973..1886109 (+) 1137 WP_023024818.1 DNA polymerase III subunit beta -
  N597_RS08895 (N597_09150) - 1886173..1886364 (+) 192 WP_023024820.1 DUF951 domain-containing protein -
  N597_RS08900 (N597_09155) - 1886552..1887046 (-) 495 WP_023024822.1 DUF1307 domain-containing protein -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29254.91 Da        Isoelectric Point: 9.0834

>NTDB_id=62930 N597_RS08880 WP_023024814.1 1882431..1883192(+) (spo0J) [Streptococcus ilei]
MEKIDIIDVKQIRTNPFQPRQTFVKEKLEELAASIKENGLIQPIIVRKSPIVGYELLAGERRYRAAQMAGFKEIPAIIRE
LSDDDMIKQAIIENLQREDLNPIEEAESYQHLIDKGATHEEIAQFMGKSRPYISNMVRLLHLSPAVKDAIKNEKISQGHA
RILVPLKEDLQIYWLERILKEGLSVRSLEEKVGQKKKTPSKKEKELFLAQEENRLKKILGTEVEIHLTKQEKGSIHISFN
NLDEYQRIINSLK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=62930 N597_RS08880 WP_023024814.1 1882431..1883192(+) (spo0J) [Streptococcus ilei]
ATGGAAAAAATTGATATTATTGACGTAAAGCAAATACGAACCAATCCTTTTCAACCTCGTCAAACCTTTGTAAAAGAGAA
ATTAGAAGAACTCGCAGCCTCAATCAAAGAAAATGGATTAATCCAACCTATTATTGTTCGAAAATCTCCTATTGTTGGTT
ATGAACTACTTGCTGGAGAAAGACGCTACCGAGCAGCTCAAATGGCTGGTTTCAAAGAAATCCCTGCGATTATAAGAGAA
TTATCAGATGATGACATGATCAAACAAGCCATTATCGAAAATTTACAAAGAGAAGATTTGAATCCAATTGAAGAGGCCGA
ATCCTACCAACATCTTATTGATAAAGGGGCTACCCATGAAGAAATTGCTCAATTTATGGGAAAATCTCGTCCTTACATCA
GCAACATGGTCCGCTTACTTCATCTCTCACCAGCTGTCAAAGACGCTATCAAAAACGAGAAAATTTCACAAGGACATGCC
CGCATTTTAGTTCCCTTAAAGGAAGATCTACAAATCTATTGGCTGGAACGAATTCTGAAAGAAGGACTAAGCGTTCGTAG
TTTGGAAGAAAAGGTTGGTCAAAAAAAGAAAACACCAAGTAAAAAAGAGAAAGAACTCTTTTTAGCACAGGAAGAAAATA
GACTAAAAAAGATTCTAGGAACCGAAGTAGAAATCCATCTGACGAAACAAGAAAAAGGAAGTATTCATATTTCATTTAAC
AACCTTGATGAATACCAACGAATTATTAACAGTCTCAAATGA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

51.779

100

0.518

Multiple sequence alignment