Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   TthHC11_RS10410 Genome accession   NZ_AP019801
Coordinates   1906591..1907400 (-) Length   269 a.a.
NCBI ID   WP_011229053.1    Uniprot ID   Q5SGW1
Organism   Thermus thermophilus strain HC11     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1901591..1912400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthHC11_RS10380 (TthHC11_20200) rsmI 1901752..1902546 (-) 795 WP_143591817.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  TthHC11_RS10385 (TthHC11_20210) - 1902548..1903042 (-) 495 WP_011173970.1 hypothetical protein -
  TthHC11_RS10390 (TthHC11_20220) - 1903106..1903633 (-) 528 WP_011173971.1 inorganic diphosphatase -
  TthHC11_RS10395 (TthHC11_20230) - 1903666..1904292 (+) 627 WP_143591818.1 YcxB family protein -
  TthHC11_RS10400 (TthHC11_20240) comEA 1904265..1904573 (+) 309 WP_024119555.1 helix-hairpin-helix domain-containing protein Machinery gene
  TthHC11_RS10405 (TthHC11_20250) comA/comEC 1904570..1906603 (+) 2034 WP_143591819.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  TthHC11_RS10410 (TthHC11_20260) spo0J 1906591..1907400 (-) 810 WP_011229053.1 ParB/RepB/Spo0J family partition protein Regulator
  TthHC11_RS10415 (TthHC11_20270) soj 1907384..1908133 (-) 750 WP_143591820.1 chromosome-partitioning ATPase Soj -
  TthHC11_RS10420 (TthHC11_20280) rsmG 1908127..1908876 (-) 750 WP_143591821.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  TthHC11_RS10425 (TthHC11_20290) mnmG 1908876..1910669 (-) 1794 WP_143591822.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29760.65 Da        Isoelectric Point: 10.1293

>NTDB_id=62930 TthHC11_RS10410 WP_011229053.1 1906591..1907400(-) (spo0J) [Thermus thermophilus strain HC11]
MSRKPSGLGRGLEALLPKTGAGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERR
YRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQL
PPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPKRPAEPSPLSLELSRHLGLPVRV
VGGKKGKVVIQYRSLEELEALLRRLGYQA

Nucleotide


Download         Length: 810 bp        

>NTDB_id=62930 TthHC11_RS10410 WP_011229053.1 1906591..1907400(-) (spo0J) [Thermus thermophilus strain HC11]
GTGTCCAGGAAGCCTAGCGGTCTCGGGCGGGGCCTCGAGGCCCTGCTCCCCAAGACGGGGGCGGGGGTGGTCCGCCTGCC
CCTCGCCAGCATCCGCCCCAACCCCCGCCAGCCGCGGAAGCGGTTCGCCGAGGAGAGCCTCAAGGAGCTCGCCGACTCCA
TCCGGGAGAAGGGCCTCCTCCAACCCCTCCTCGTCCGGCCCCAGGGGGACGGGTACGAGCTCGTGGCGGGGGAAAGGCGC
TACCGGGCCGCCCTCATGGCGGGGCTTCAGGAGGTCCCCGCCGTGGTCAAGGACCTCACGGACCGGGAGGCCTTGGAGCT
CGCCCTGGTGGAGAACCTCCAGCGGGAGGACCTCTCCCCCGTGGAGGAGGCCCGGGGCTACCAGGCCCTTTTGGAGATGG
GCCTCACCCAGGAGGAGGTGGCCCGGCGGGTGGGCAAGGCCCGCTCCACCGTGGCCAACGCCCTCAGGCTCCTCCAGCTT
CCCCCCGAGGCCCTCGAGGCCCTGGAGCGGGGGGAGATCACCGCGGGCCACGCCCGGGCCCTCCTCATGCTGGAGCCCGA
GGACCGGCTCTGGGGGCTTAAGGAGATCCTGGAGAAGGGGCTTTCCGTGCGGCAGGCGGAGGCCCTGAGGGAGCGCCTGG
CCATGGCCCCTAAGCGCCCCGCTGAGCCCTCCCCCCTCTCCCTGGAGCTCTCCCGCCACCTGGGCCTGCCCGTGAGGGTG
GTGGGGGGGAAGAAGGGCAAGGTGGTGATCCAGTACCGCTCCTTGGAGGAGCTGGAGGCCCTTCTGCGGCGCCTCGGCTA
CCAGGCGTAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(162-210)

ParB/Sulfiredoxin domain (ParB_N)

(26-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5SGW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.6

92.937

0.387

Multiple sequence alignment