Detailed information NTG0629243

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LOZ87_RS01985
• Genome accession: NZ_CP087391
• Coordinates: 391839..392987 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ZF57
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 386839..397987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOZ87_RS01965 (LOZ87_01965)	-	387236..387919 (-)	684	WP_039062608.1	ABC transporter ATP-binding protein	-
LOZ87_RS01970 (LOZ87_01970)	-	387934..389370 (-)	1437	WP_039062609.1	ABC transporter permease	-
LOZ87_RS01975 (LOZ87_01975)	-	389583..390266 (+)	684	WP_007410267.1	response regulator transcription factor	-
LOZ87_RS01980 (LOZ87_01980)	-	390253..391686 (+)	1434	WP_020953885.1	ATP-binding protein	-
LOZ87_RS01985 (LOZ87_01985)	rapC	391839..392987 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
LOZ87_RS01990 (LOZ87_01990)	phrC	392971..393090 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
LOZ87_RS01995 (LOZ87_01995)	-	393238..393348 (-)	111	WP_369878517.1	YjcZ family sporulation protein	-
LOZ87_RS02000 (LOZ87_02000)	-	393428..394792 (-)	1365	WP_020955323.1	aspartate kinase	-
LOZ87_RS02005 (LOZ87_02005)	ceuB	395206..396159 (+)	954	WP_015239156.1	ABC transporter permease	Machinery gene
LOZ87_RS02010 (LOZ87_02010)	-	396149..397096 (+)	948	WP_039062612.1	iron chelate uptake ABC transporter family permease subunit	-
LOZ87_RS02015 (LOZ87_02015)	-	397090..397848 (+)	759	WP_039062614.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=629243 LOZ87_RS01985 WP_007410270.1 391839..392987(+) (rapC) [Bacillus amyloliquefaciens strain ZF57]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=629243 LOZ87_RS01985 WP_007410270.1 391839..392987(+) (rapC) [Bacillus amyloliquefaciens strain ZF57]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATATATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTATTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTATACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAGGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568