Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   TthHC11_RS08505 Genome accession   NZ_AP019801
Coordinates   1587626..1588210 (+) Length   194 a.a.
NCBI ID   WP_011228798.1    Uniprot ID   Q5SHY0
Organism   Thermus thermophilus strain HC11     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1582626..1593210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthHC11_RS08485 (TthHC11_16540) - 1583349..1585064 (+) 1716 WP_143591558.1 hypothetical protein -
  TthHC11_RS08490 (TthHC11_16550) - 1585107..1586300 (+) 1194 WP_143591560.1 MFS transporter -
  TthHC11_RS08495 (TthHC11_16560) hemB 1586297..1587277 (-) 981 WP_172967291.1 porphobilinogen synthase -
  TthHC11_RS08500 (TthHC11_16570) - 1587308..1587625 (+) 318 WP_008633232.1 YbaB/EbfC family nucleoid-associated protein -
  TthHC11_RS08505 (TthHC11_16580) recR 1587626..1588210 (+) 585 WP_011228798.1 recombination mediator RecR Machinery gene
  TthHC11_RS08510 (TthHC11_16590) - 1588213..1588596 (+) 384 WP_143591564.1 hypothetical protein -
  TthHC11_RS08515 (TthHC11_16600) - 1588584..1588925 (+) 342 WP_011173642.1 roadblock/LC7 domain-containing protein -
  TthHC11_RS08520 (TthHC11_16610) - 1588910..1589248 (+) 339 WP_143591566.1 roadblock/LC7 domain-containing protein -
  TthHC11_RS08525 (TthHC11_16620) - 1589245..1589511 (+) 267 WP_011173644.1 DUF3467 domain-containing protein -
  TthHC11_RS08530 (TthHC11_16630) - 1589571..1591376 (-) 1806 WP_172967292.1 S9 family peptidase -
  TthHC11_RS08535 (TthHC11_16640) - 1591444..1592172 (+) 729 WP_011228802.1 Nif3-like dinuclear metal center hexameric protein -
  TthHC11_RS08540 (TthHC11_16650) tmk 1592173..1592769 (+) 597 WP_143591571.1 dTMP kinase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21207.39 Da        Isoelectric Point: 5.2052

>NTDB_id=62918 TthHC11_RS08505 WP_011228798.1 1587626..1588210(+) (recR) [Thermus thermophilus strain HC11]
MRYPESLLKLTRALSRLPGIGPKTAQRLALHLAFHKEEAEALAEALEGIKRVRACRECGNLAEGELCPICQDEDRDRSLL
AVVESVADLYALERSGEFRGLYHVLGGALNPLEGIGPKELNLEGLFRRLEGVEEVVLATSMTVEGEATALYLAEELKKRG
VRVTRPAYGLPVGGSLEYADEVTLGRALEGRRPV

Nucleotide


Download         Length: 585 bp        

>NTDB_id=62918 TthHC11_RS08505 WP_011228798.1 1587626..1588210(+) (recR) [Thermus thermophilus strain HC11]
ATGCGCTACCCGGAAAGCCTCCTCAAGCTCACCCGGGCCCTCTCCCGCCTCCCCGGCATCGGCCCCAAGACGGCCCAGCG
CCTGGCCCTCCACCTCGCCTTCCACAAGGAGGAGGCCGAGGCCCTGGCGGAGGCCCTGGAGGGGATCAAGCGGGTCCGGG
CCTGCCGCGAGTGCGGCAACCTGGCCGAGGGGGAGCTCTGCCCCATCTGCCAGGACGAGGACCGGGACCGCTCCCTCCTC
GCCGTGGTGGAGAGCGTGGCCGACCTGTACGCCCTGGAGCGGAGCGGGGAGTTCCGGGGCCTCTACCACGTCCTGGGAGG
GGCCTTGAACCCCCTGGAGGGCATCGGCCCCAAGGAGCTCAACCTGGAGGGCCTCTTCCGGCGGCTGGAAGGCGTGGAGG
AGGTGGTCCTCGCCACCTCCATGACCGTGGAGGGGGAGGCCACCGCCCTCTACCTCGCCGAGGAGCTGAAGAAGCGGGGG
GTGCGGGTGACCCGGCCCGCCTACGGCCTCCCCGTGGGGGGGAGCCTGGAGTACGCCGACGAGGTGACCCTGGGCCGGGC
CCTGGAGGGGAGGCGGCCCGTCTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-76)

Toprim domain (Toprim_4)

(80-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZVQ
  PDB 8A93
  PDB 8AB0
  PDB 8BPR

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.102

100

0.557
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

100

0.49
  recR Streptococcus pneumoniae R6

45.128

100

0.454

Multiple sequence alignment