Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LO000_RS18395 Genome accession   NZ_CP087354
Coordinates   3776284..3776811 (-) Length   175 a.a.
NCBI ID   WP_000695059.1    Uniprot ID   A0A0D5YDP9
Organism   Acinetobacter baumannii strain DB002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3771284..3781811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO000_RS18375 - 3771473..3772348 (-) 876 WP_000218810.1 hypothetical protein -
  LO000_RS18380 aroB 3772364..3773446 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  LO000_RS18385 aroK 3773475..3774044 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LO000_RS18390 pilQ 3774056..3776221 (-) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  LO000_RS18395 pilP 3776284..3776811 (-) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  LO000_RS18400 pilO 3776822..3777562 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO000_RS18405 pilN 3777559..3778200 (-) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  LO000_RS18410 pilM 3778200..3779258 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19371.59 Da        Isoelectric Point: 9.0270

>NTDB_id=629132 LO000_RS18395 WP_000695059.1 3776284..3776811(-) (pilP) [Acinetobacter baumannii strain DB002]
MKIKQITLCVLASVVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=629132 LO000_RS18395 WP_000695059.1 3776284..3776811(-) (pilP) [Acinetobacter baumannii strain DB002]
ATGAAAATTAAGCAAATTACTCTTTGTGTTTTGGCGAGTGTTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTTGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATCACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YDP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.286

100

0.983
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714