Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LO000_RS18405 Genome accession   NZ_CP087354
Coordinates   3777559..3778200 (-) Length   213 a.a.
NCBI ID   WP_000201229.1    Uniprot ID   A0A0J0ZM99
Organism   Acinetobacter baumannii strain DB002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3772559..3783200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO000_RS18385 aroK 3773475..3774044 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LO000_RS18390 pilQ 3774056..3776221 (-) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  LO000_RS18395 pilP 3776284..3776811 (-) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  LO000_RS18400 pilO 3776822..3777562 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO000_RS18405 pilN 3777559..3778200 (-) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  LO000_RS18410 pilM 3778200..3779258 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LO000_RS18415 ponA 3779420..3781975 (+) 2556 WP_072292235.1 penicillin-binding protein PBP1a -
  LO000_RS18420 - 3781993..3782817 (-) 825 WP_001990541.1 putative RNA methyltransferase -
  LO000_RS18425 - 3782820..3783152 (-) 333 WP_000169598.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24063.40 Da        Isoelectric Point: 5.3968

>NTDB_id=629134 LO000_RS18405 WP_000201229.1 3777559..3778200(-) (pilN) [Acinetobacter baumannii strain DB002]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKSASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=629134 LO000_RS18405 WP_000201229.1 3777559..3778200(-) (pilN) [Acinetobacter baumannii strain DB002]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGTCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGCGAAAGTGTGGGGGTCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.038

99.061

0.714