Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LO008_RS19070 Genome accession   NZ_CP087351
Coordinates   3917797..3919023 (-) Length   408 a.a.
NCBI ID   WP_000279216.1    Uniprot ID   A0A009IRK3
Organism   Acinetobacter baumannii strain DB003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3912797..3924023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO008_RS19040 - 3912828..3914138 (+) 1311 WP_000753277.1 tetratricopeptide repeat protein -
  LO008_RS19045 - 3914215..3914541 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  LO008_RS19050 rlmB 3914643..3915392 (+) 750 WP_001118150.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LO008_RS19055 - 3915428..3916342 (+) 915 WP_000075011.1 DMT family transporter -
  LO008_RS19060 coaE 3916339..3916935 (-) 597 WP_000874125.1 dephospho-CoA kinase -
  LO008_RS19065 pilD 3916937..3917797 (-) 861 WP_001152277.1 A24 family peptidase Machinery gene
  LO008_RS19070 pilC 3917797..3919023 (-) 1227 WP_000279216.1 type II secretion system F family protein Machinery gene
  LO008_RS19075 pilB 3919053..3920765 (-) 1713 WP_001274987.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LO008_RS19080 tpiA 3921056..3921850 (+) 795 WP_000016931.1 triose-phosphate isomerase -
  LO008_RS19085 secG 3921863..3922192 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -
  LO008_RS19105 rimP 3922834..3923358 (+) 525 WP_000777730.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44936.43 Da        Isoelectric Point: 9.9566

>NTDB_id=629085 LO008_RS19070 WP_000279216.1 3917797..3919023(-) (pilC) [Acinetobacter baumannii strain DB003]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=629085 LO008_RS19070 WP_000279216.1 3917797..3919023(-) (pilC) [Acinetobacter baumannii strain DB003]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAGGGAGA
ACTTCCGGCTAAAAACATGGCCTTAGCCAAAGTAACCTTACGCAAACAAGGAGTGACTGTTCGAAATATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTTCAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACAATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTAGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGTAGTAAAAAGTTTCGTGACGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAGGCAATCATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGAGTGTCTAATCGTTTTCCATCTATGGCTATACAAATGGTGGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACCTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009IRK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.755

100

0.998
  pilC Acinetobacter baylyi ADP1

86.029

100

0.86
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilG Neisseria meningitidis 44/76-A

47.236

97.549

0.461
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36