Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LO006_RS17165 Genome accession   NZ_CP087348
Coordinates   3531169..3532029 (+) Length   286 a.a.
NCBI ID   WP_001152285.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3526169..3537029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO006_RS17145 secG 3526773..3527102 (-) 330 WP_000555572.1 preprotein translocase subunit SecG -
  LO006_RS17150 tpiA 3527115..3527909 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  LO006_RS17155 pilB 3528201..3529913 (+) 1713 WP_001274990.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LO006_RS17160 pilC 3529943..3531169 (+) 1227 WP_000279216.1 type II secretion system F family protein Machinery gene
  LO006_RS17165 pilD 3531169..3532029 (+) 861 WP_001152285.1 A24 family peptidase Machinery gene
  LO006_RS17170 coaE 3532031..3532627 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  LO006_RS17175 - 3532624..3533538 (-) 915 WP_000075011.1 DMT family transporter -
  LO006_RS17180 rlmB 3533574..3534323 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LO006_RS17185 - 3534425..3534751 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  LO006_RS17190 - 3534828..3536138 (-) 1311 WP_000753294.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32153.54 Da        Isoelectric Point: 7.1042

>NTDB_id=629035 LO006_RS17165 WP_001152285.1 3531169..3532029(+) (pilD) [Acinetobacter baumannii strain DB006]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
IGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=629035 LO006_RS17165 WP_001152285.1 3531169..3532029(+) (pilD) [Acinetobacter baumannii strain DB006]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCAATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCATCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
ATTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99
  pilD Acinetobacter nosocomialis M2

97.902

100

0.979
  pilD Vibrio cholerae strain A1552

52.941

95.105

0.503
  pilD Vibrio campbellii strain DS40M4

52.03

94.755

0.493
  pilD Neisseria gonorrhoeae MS11

48.485

92.308

0.448