Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LOZ99_RS18570 Genome accession   NZ_CP087344
Coordinates   3793148..3793621 (-) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii strain DB007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3788148..3798621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ99_RS18555 pilX 3790777..3791595 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LOZ99_RS18560 pilW 3791592..3792593 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  LOZ99_RS18565 pilV 3792594..3793154 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LOZ99_RS18570 fimU 3793148..3793621 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LOZ99_RS18575 ispH 3793791..3794741 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LOZ99_RS18580 gmk 3794864..3795493 (+) 630 WP_000015937.1 guanylate kinase -
  LOZ99_RS18585 rpoZ 3795566..3795844 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LOZ99_RS18590 - 3795883..3796013 (+) 131 Protein_3628 hypothetical protein -
  LOZ99_RS18595 - 3796053..3798158 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=628992 LOZ99_RS18570 WP_001214060.1 3793148..3793621(-) (fimU) [Acinetobacter baumannii strain DB007]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=628992 LOZ99_RS18570 WP_001214060.1 3793148..3793621(-) (fimU) [Acinetobacter baumannii strain DB007]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987