Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LOZ99_RS18555 Genome accession   NZ_CP087344
Coordinates   3790777..3791595 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain DB007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3785777..3796595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ99_RS18540 pilE 3785996..3786421 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  LOZ99_RS18545 pilY2 3786418..3786900 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  LOZ99_RS18550 pilY1 3786911..3790765 (-) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  LOZ99_RS18555 pilX 3790777..3791595 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LOZ99_RS18560 pilW 3791592..3792593 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  LOZ99_RS18565 pilV 3792594..3793154 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LOZ99_RS18570 fimU 3793148..3793621 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LOZ99_RS18575 ispH 3793791..3794741 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LOZ99_RS18580 gmk 3794864..3795493 (+) 630 WP_000015937.1 guanylate kinase -
  LOZ99_RS18585 rpoZ 3795566..3795844 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LOZ99_RS18590 - 3795883..3796013 (+) 131 Protein_3628 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=628989 LOZ99_RS18555 WP_000149374.1 3790777..3791595(-) (pilX) [Acinetobacter baumannii strain DB007]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=628989 LOZ99_RS18555 WP_000149374.1 3790777..3791595(-) (pilX) [Acinetobacter baumannii strain DB007]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993