Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N4269_RS08915 Genome accession   NZ_CP104356
Coordinates   1977473..1978075 (-) Length   200 a.a.
NCBI ID   WP_001260579.1    Uniprot ID   Q9KT49
Organism   Vibrio cholerae strain PNUSAV001141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1972473..1983075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4269_RS08885 (N4269_08885) - 1972707..1973162 (-) 456 WP_001918409.1 Lrp/AsnC family transcriptional regulator -
  N4269_RS08890 (N4269_08890) - 1973287..1974354 (+) 1068 WP_001961193.1 PLP-dependent cysteine synthase family protein -
  N4269_RS08895 (N4269_08895) sohB 1974479..1975540 (-) 1062 WP_000394900.1 protease SohB -
  N4269_RS08900 (N4269_08900) - 1975699..1976442 (+) 744 WP_057554270.1 YciK family oxidoreductase -
  N4269_RS08905 (N4269_08905) - 1976536..1976973 (-) 438 WP_001884585.1 YcgN family cysteine cluster protein -
  N4269_RS08910 (N4269_08910) - 1977115..1977363 (+) 249 WP_000340598.1 YkgJ family cysteine cluster protein -
  N4269_RS08915 (N4269_08915) recR 1977473..1978075 (-) 603 WP_001260579.1 recombination mediator RecR Machinery gene
  N4269_RS08920 (N4269_08920) - 1978090..1978419 (-) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  N4269_RS08925 (N4269_08925) dnaX 1978490..1980568 (-) 2079 WP_134986978.1 DNA polymerase III subunit gamma/tau -
  N4269_RS08930 (N4269_08930) apt 1980587..1981132 (-) 546 WP_000206218.1 adenine phosphoribosyltransferase -
  N4269_RS08935 (N4269_08935) - 1981264..1981662 (-) 399 WP_001880857.1 YbaN family protein -
  N4269_RS08940 (N4269_08940) - 1981662..1981793 (-) 132 WP_000013199.1 hypothetical protein -
  N4269_RS08945 (N4269_08945) - 1981963..1983054 (-) 1092 WP_032477943.1 response regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21840.95 Da        Isoelectric Point: 6.1558

>NTDB_id=628989 N4269_RS08915 WP_001260579.1 1977473..1978075(-) (recR) [Vibrio cholerae strain PNUSAV001141]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLAEALSQAMVEIGHCQECRTFTEQDVCHICSNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRGDISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=628989 N4269_RS08915 WP_001260579.1 1977473..1978075(-) (recR) [Vibrio cholerae strain PNUSAV001141]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCATTACGCTGCCTGCCGGGTGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTTCATCTGTTACAGCGCGATCGTAAAGGTGGTTTACAACTGGCTGAGGCACTGAGTCAGGCGATGGTCGAAA
TCGGCCATTGTCAGGAGTGCCGAACTTTTACTGAGCAGGATGTTTGTCACATCTGTAGCAACCCAAAACGTAAAGAAAAT
GGTCAGTTGTGTGTGGTTGAAAGCCCAGCAGATATTGCGGCGCTAGAAGCTACCGGTCAATTTTCTGGTCGCTATTTTGT
GTTGATGGGGCACTTATCACCGCTGGATGGTATTGGTCCGAGCGATATTGGCCTCGATACGCTAGATTATCGCTTGCAAC
GCGGTGATATCAGTGAGGTGATCCTCGCCACTAACCCGACGGTGGAAGGTGAGGCGACCGCGCAATACATTGCCGAGTTG
TGTCGTGAGCATCAAGTCACCGCAAGCCGCATTGCACATGGTGTTCCCGTGGGCGGCGAACTTGAGTTGGTGGATGGCAC
GACCTTATCGCATTCGCTGTTGGGCCGTCACAAACTGTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44