Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LO011_RS16810 Genome accession   NZ_CP087340
Coordinates   3463159..3463686 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain DB008     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3458159..3468686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO011_RS16790 - 3458348..3459223 (-) 876 WP_004745382.1 hypothetical protein -
  LO011_RS16795 aroB 3459239..3460321 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  LO011_RS16800 aroK 3460350..3460919 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LO011_RS16805 pilQ 3460931..3463096 (-) 2166 WP_258579415.1 type IV pilus secretin PilQ family protein Machinery gene
  LO011_RS16810 pilP 3463159..3463686 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LO011_RS16815 pilO 3463697..3464437 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO011_RS16820 pilN 3464434..3465075 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  LO011_RS16825 pilM 3465075..3466133 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=628947 LO011_RS16810 WP_000695065.1 3463159..3463686(-) (pilP) [Acinetobacter baumannii strain DB008]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=628947 LO011_RS16810 WP_000695065.1 3463159..3463686(-) (pilP) [Acinetobacter baumannii strain DB008]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTTTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714