Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LO011_RS16820 Genome accession   NZ_CP087340
Coordinates   3464434..3465075 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain DB008     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3459434..3470075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO011_RS16800 aroK 3460350..3460919 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LO011_RS16805 pilQ 3460931..3463096 (-) 2166 WP_258579415.1 type IV pilus secretin PilQ family protein Machinery gene
  LO011_RS16810 pilP 3463159..3463686 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LO011_RS16815 pilO 3463697..3464437 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO011_RS16820 pilN 3464434..3465075 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  LO011_RS16825 pilM 3465075..3466133 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LO011_RS16830 ponA 3466296..3468851 (+) 2556 WP_005134594.1 penicillin-binding protein PBP1a -
  LO011_RS16835 - 3468869..3469693 (-) 825 WP_005134593.1 putative RNA methyltransferase -
  LO011_RS16840 - 3469696..3470028 (-) 333 WP_000169601.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=628949 LO011_RS16820 WP_000201227.1 3464434..3465075(-) (pilN) [Acinetobacter baumannii strain DB008]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=628949 LO011_RS16820 WP_000201227.1 3464434..3465075(-) (pilN) [Acinetobacter baumannii strain DB008]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709