Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LO011_RS16700 Genome accession   NZ_CP087340
Coordinates   3437935..3438408 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain DB008     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3432935..3443408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO011_RS16685 pilX 3435564..3436382 (-) 819 WP_000149371.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO011_RS16690 pilW 3436379..3437380 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  LO011_RS16695 pilV 3437381..3437941 (-) 561 WP_153310066.1 type IV pilus modification protein PilV Machinery gene
  LO011_RS16700 fimU 3437935..3438408 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LO011_RS16705 ispH 3438578..3439528 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LO011_RS16710 gmk 3439651..3440280 (+) 630 WP_000015937.1 guanylate kinase -
  LO011_RS16715 rpoZ 3440353..3440631 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LO011_RS16720 - 3440670..3440800 (+) 131 Protein_3258 hypothetical protein -
  LO011_RS16725 - 3440840..3442945 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=628944 LO011_RS16700 WP_001214065.1 3437935..3438408(-) (fimU) [Acinetobacter baumannii strain DB008]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=628944 LO011_RS16700 WP_001214065.1 3437935..3438408(-) (fimU) [Acinetobacter baumannii strain DB008]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCATT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1