Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LO011_RS16325 Genome accession   NZ_CP087340
Coordinates   3359471..3360106 (+) Length   211 a.a.
NCBI ID   WP_000472269.1    Uniprot ID   A0A383KXM5
Organism   Acinetobacter baumannii strain DB008     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3354471..3365106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO011_RS16310 adeT2 3355531..3356517 (-) 987 WP_000712910.1 putative multidrug efflux protein AdeT2 -
  LO011_RS16315 - 3356597..3357412 (-) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  LO011_RS16320 recG 3357433..3359478 (+) 2046 WP_000204955.1 ATP-dependent DNA helicase RecG -
  LO011_RS16325 comF 3359471..3360106 (+) 636 WP_000472269.1 ComF family protein Machinery gene
  LO011_RS16330 - 3360109..3360510 (-) 402 WP_004839704.1 NUDIX domain-containing protein -
  LO011_RS16335 - 3360525..3361106 (-) 582 WP_002133678.1 TIGR00730 family Rossman fold protein -
  LO011_RS16340 - 3361264..3362277 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  LO011_RS16345 - 3362347..3362634 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  LO011_RS16350 - 3362646..3363287 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  LO011_RS16355 - 3363314..3363994 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LO011_RS16360 mlaE 3363994..3364770 (-) 777 WP_002061269.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24521.60 Da        Isoelectric Point: 9.5702

>NTDB_id=628937 LO011_RS16325 WP_000472269.1 3359471..3360106(+) (comF) [Acinetobacter baumannii strain DB008]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLGKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQENRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=628937 LO011_RS16325 WP_000472269.1 3359471..3360106(+) (comF) [Acinetobacter baumannii strain DB008]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTCCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGAGGTTTTAATCAATCCTTATTACTTGCCAATCTTTTGGGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAACCGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(160-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A383KXM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

100

100

1
  comF Acinetobacter baumannii strain A118

99.052

100

0.991