Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LO011_RS01760 Genome accession   NZ_CP087340
Coordinates   362420..363280 (-) Length   286 a.a.
NCBI ID   WP_001152273.1    Uniprot ID   A0A836M4G0
Organism   Acinetobacter baumannii strain DB008     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 357420..368280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO011_RS01735 - 358311..359621 (+) 1311 WP_106440482.1 tetratricopeptide repeat protein -
  LO011_RS01740 - 359698..360024 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  LO011_RS01745 rlmB 360126..360875 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LO011_RS01750 - 360911..361825 (+) 915 WP_000075014.1 DMT family transporter -
  LO011_RS01755 coaE 361822..362418 (-) 597 WP_000874125.1 dephospho-CoA kinase -
  LO011_RS01760 pilD 362420..363280 (-) 861 WP_001152273.1 A24 family peptidase Machinery gene
  LO011_RS01765 pilC 363280..364506 (-) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  LO011_RS01770 pilB 364536..366248 (-) 1713 WP_031966873.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LO011_RS01775 tpiA 366539..367333 (+) 795 WP_029423716.1 triose-phosphate isomerase -
  LO011_RS01780 secG 367346..367675 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32088.53 Da        Isoelectric Point: 7.1041

>NTDB_id=628914 LO011_RS01760 WP_001152273.1 362420..363280(-) (pilD) [Acinetobacter baumannii strain DB008]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=628914 LO011_RS01760 WP_001152273.1 362420..363280(-) (pilD) [Acinetobacter baumannii strain DB008]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGTCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTAATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M4G0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99
  pilD Acinetobacter nosocomialis M2

98.601

100

0.986
  pilD Vibrio cholerae strain A1552

54.044

95.105

0.514
  pilD Vibrio campbellii strain DS40M4

52.92

95.804

0.507
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441