Detailed information NTG0628910

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LO011_RS01310
• Genome accession: NZ_CP087340
• Coordinates: 269886..271307 (-)
• Length: 473 a.a.
• NCBI ID: WP_258579487.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain DB008
• Function: regulation of type IV pilus assembly (predicted from homology) Competence regulation

Genomic Context

Location: 264886..276307

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LO011_RS01295	lptG	265939..267009 (+)	1071	WP_000881094.1	LPS export ABC transporter permease LptG	-
LO011_RS01300	gpmI	267135..268682 (+)	1548	WP_258579486.1	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	-
LO011_RS01305	-	268698..269882 (+)	1185	WP_075400781.1	S41 family peptidase	-
LO011_RS01310	pilR	269886..271307 (-)	1422	WP_258579487.1	sigma-54 dependent transcriptional regulator	Regulator
LO011_RS01315	pilS	271332..272900 (-)	1569	WP_001160346.1	PAS domain-containing sensor histidine kinase	Regulator
LO011_RS01320	-	272911..273546 (-)	636	WP_000633799.1	response regulator	-
LO011_RS01325	pbpG	273759..274805 (+)	1047	WP_001984577.1	D-alanyl-D-alanine endopeptidase PBP7/8	-
LO011_RS01330	thrC	274910..276049 (-)	1140	WP_258579488.1	threonine synthase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 53078.31 Da
• Isoelectric Point: 6.6690

>NTDB_id=628910 LO011_RS01310 WP_258579487.1 269886..271307(-) (pilR) [Acinetobacter baumannii strain DB008]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYTNTPI
AVLTVYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKIEHDATENALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMEWETPPKQLTEAAEIYLLQQHFPGNVRELRNMIERAITLSEDATIDISHLHPAPLRANISNPFASAAQS
IQTTVAAPQVVKKLPSEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide

• Length: 1422 bp

>NTDB_id=628910 LO011_RS01310 WP_258579487.1 269886..271307(-) (pilR) [Acinetobacter baumannii strain DB008]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTATTGATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGGTTAGACTTAGTCAAACATGTCTCTCAAAATTATACTAATACTCCCATT
GCAGTTTTAACTGTATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAATAGAGCATGATGCTACCGAGAATG
CGTTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATCCAGCAGCTACGTATTGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACCGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCCAATCTGGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCGATTAACTGCGGTGCTATTCCAACCGAACTGATGGAAAGTGAGTTGTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAGCAAGGCCTCATTTTATCGGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGTGCAGTACAGGAAAAAAAGATCCGACCTGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGATTTAGATTTATTGGTTAGACAGGGCAAATTCC
GTCAAGATTTATTTTTCCGTATTCACGTTATGGACCTCATATTGCCGCCTCTACGTGAACGTGGCGAAGATGTCCTTTTG
CTTGCTAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACGCCACCTAAACAATTAACAGAAGCAGCCGAAATTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGATG
CCACCATAGATATATCTCATTTACATCCTGCTCCACTAAGAGCGAATATTTCTAATCCTTTTGCTTCCGCTGCTCAAAGC
ATACAAACCACTGTGGCGGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGTCTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCACTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGATTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (8-117)

• Bacterial regulatory protein, Fis family (HTH_8) (423-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Acinetobacter baumannii strain A118	98.732	100	0.987
pilR	Pseudomonas aeruginosa PAK	50.98	97.04	0.495