Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   N4267_RS09875 Genome accession   NZ_CP104354
Coordinates   2183978..2185642 (+) Length   554 a.a.
NCBI ID   WP_057552513.1    Uniprot ID   -
Organism   Vibrio cholerae strain PNUSAV001140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2178978..2190642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4267_RS09855 (N4267_09855) dnaK 2180045..2181952 (-) 1908 WP_000516147.1 molecular chaperone DnaK -
  N4267_RS09860 (N4267_09860) - 2182110..2182223 (+) 114 WP_228006377.1 transporter -
  N4267_RS09865 (N4267_09865) grpE 2182216..2182818 (-) 603 WP_000064037.1 nucleotide exchange factor GrpE -
  N4267_RS09870 (N4267_09870) nadK 2182964..2183848 (+) 885 WP_000742830.1 NAD(+) kinase -
  N4267_RS09875 (N4267_09875) recN 2183978..2185642 (+) 1665 WP_057552513.1 DNA repair protein RecN Machinery gene
  N4267_RS09880 (N4267_09880) bamE 2185801..2186160 (+) 360 WP_162298880.1 outer membrane protein assembly factor BamE -
  N4267_RS09885 (N4267_09885) - 2186238..2186543 (-) 306 WP_001918351.1 RnfH family protein -
  N4267_RS09890 (N4267_09890) - 2186546..2186980 (-) 435 WP_000815880.1 SRPBCC family protein -
  N4267_RS09895 (N4267_09895) smpB 2187164..2187649 (+) 486 WP_000162689.1 SsrA-binding protein SmpB -
  N4267_RS09905 (N4267_09905) - 2188250..2189500 (+) 1251 WP_260813050.1 integrase domain-containing protein -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 61219.93 Da        Isoelectric Point: 5.7696

>NTDB_id=628906 N4267_RS09875 WP_057552513.1 2183978..2185642(+) (recN) [Vibrio cholerae strain PNUSAV001140]
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEHQLSMLDQYAGHADLLKATR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEHKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVLQD
SAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=628906 N4267_RS09875 WP_057552513.1 2183978..2185642(+) (recN) [Vibrio cholerae strain PNUSAV001140]
ATGCTGGCTCACTTAAGTATCAATAACTTCGCTATCGTAAAGTCACTACAACTCGAATTATCAAAAGGAATGACCACCAT
TACCGGCGAAACCGGTGCCGGTAAATCCATTGCGATTGATGCTTTAGGTTTATGCCTTGGTGGTCGAGCCGAAGCCAGCA
TGGTGCGTCAAGGTGAAGATAAAACCGAAGTCAGCGCTGCCTTTCATCTGGATAACAATCTGCTCGCTAGCCGTTGGTTA
GAAGATAATGAACTGCTTGAAGGCAAAGAGTGCATTCTGCGCCGAATCATCACCAAAGATGGGCGCTCTAAAGCCTTTAT
TAATGGCAGCCCAGTTCCGCTCTCTCAACTCAAAACATTGGGGCAACTGCTGATCAATGTGCATGGTCAACACGCACATC
AGCAACTGATGAAACCGGAACATCAGCTCAGCATGCTTGATCAATACGCAGGTCATGCAGACTTGCTCAAAGCCACGCGT
CACGCCTATCAAAATTGGCGTCAGGCGAGCAATCAGCTCAAACAGCTGCGCGAAAATAGCCAACAAAATCAGGCACAGTT
ACAACTTTTGGAATACCAAATCAAAGAGCTCAACGAATTAGCACTCGGTGAGGATGAGTTTGTCGAGCTAGAACAAGAGC
ATAAACGCTTAGCCAATAGCGGCGATCTGGCACTCAACTGCCAACGCGCGATTGAACTGCTCAATGAAGGGGAAGAAGTA
AACGCCTTAGGCCTTTTACAAAGTGTTAGCCATACGCTGATTGATCTGGCTGAAATGGATAGCAAACTGACAGCGCTCCC
TTCTATGGTGGCCGAAGCGCTGATCCAACTTGAAGAGACTTACCATGAACTGCGCAACTACTTGGATTCGATTGATGTCG
ACCCAGAACGCATGGCGTATGTAGAAGAGCGCTACTCCAAAGTCATGTCGCTCGCGCGTAAACATCATGTACTGCCAGAA
GAGCTGTATCAGCATCACCAAGCACTCTTGCAGCAAATTGCTCAGCTAGATTGTTCTGACGAGAAAATGTCAGCACTCGC
GAGTGAAGTCGACGTGCTCTACCAAACCTTTGTTGCGGCCGCTGACAAACTGCACAAATCTCGTGTTCGCTATGCCAAAG
AATTGGATAAATTGATTAGCCAAAGCATGCATGAGCTGAGCATGGAAAAAGCGCAATTCAAAATCGAAGTGCTGCAAGAC
AGCGCGCACTCATCGCCATTAGGTTTTGATGCCGTGACTTTCTTAGTCTCGACGAACCCAGGTCAACCGCTGCAACCCAT
CGCCAAAGTGGCCTCTGGTGGTGAACTGTCACGGATGTCATTGGCGATCCAAGTGATTACTGCGCAGAAAGTCGATACTC
CAAGCCTGATTTTTGATGAAGTTGACGTGGGTATTTCAGGGCCAACAGCAGCCGTAGTTGGCAAACTACTGCGCAAATTG
GGCGAGTCGACTCAAGTACTGTGTGTCACCCACTTACCGCAAGTGGCAGGTTGCGGACACCATCAACTGTTTGTCGCCAA
ACAGACCAAAGCAGGCAAAACCGAAACGCAAATGCTCAAACTGGATCAAGAACAGCGCATTGCTGAACTGGCGCGCTTGC
TCGGAGGCAGCCAAATTACCGAATCCACGCTCGCGAATGCTAAAGAGCTATTAATCGCAGCCTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

37.3

100

0.379
  recN Bacillus subtilis subsp. subtilis str. 168

35.192

100

0.365