Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   LO010_RS10580 Genome accession   NZ_CP087335
Coordinates   2223605..2223985 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB053     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2218605..2228985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO010_RS10550 tadA 2218723..2219226 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  LO010_RS10555 - 2219233..2220357 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  LO010_RS10560 ung 2220354..2221067 (-) 714 WP_258580218.1 uracil-DNA glycosylase -
  LO010_RS10565 - 2221118..2221714 (-) 597 WP_000908455.1 6-carboxytetrahydropterin synthase -
  LO010_RS10570 gspK 2221945..2222904 (-) 960 WP_000301460.1 type II secretion system minor pseudopilin GspK -
  LO010_RS10575 xcpW 2222904..2223605 (-) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LO010_RS10580 xcpV 2223605..2223985 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  LO010_RS10585 - 2223975..2224529 (-) 555 WP_000841367.1 type II secretion system protein -
  LO010_RS10590 - 2224539..2225147 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  LO010_RS10595 - 2225185..2225958 (-) 774 WP_000497304.1 TatD family hydrolase -
  LO010_RS10600 - 2225976..2226317 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  LO010_RS10605 - 2226329..2227309 (-) 981 WP_001075408.1 DNA polymerase III subunit delta' -
  LO010_RS10610 kdsB 2227321..2228082 (-) 762 WP_000680702.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=628882 LO010_RS10580 WP_000836911.1 2223605..2223985(-) (xcpV) [Acinetobacter baumannii strain DB053]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=628882 LO010_RS10580 WP_000836911.1 2223605..2223985(-) (xcpV) [Acinetobacter baumannii strain DB053]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAAGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1