Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   LO010_RS10575 Genome accession   NZ_CP087335
Coordinates   2222904..2223605 (-) Length   233 a.a.
NCBI ID   WP_000594572.1    Uniprot ID   A0A009IN88
Organism   Acinetobacter baumannii strain DB053     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2217904..2228605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO010_RS10545 - 2218210..2218653 (-) 444 WP_001246675.1 SRPBCC family protein -
  LO010_RS10550 tadA 2218723..2219226 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  LO010_RS10555 - 2219233..2220357 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  LO010_RS10560 ung 2220354..2221067 (-) 714 WP_258580218.1 uracil-DNA glycosylase -
  LO010_RS10565 - 2221118..2221714 (-) 597 WP_000908455.1 6-carboxytetrahydropterin synthase -
  LO010_RS10570 gspK 2221945..2222904 (-) 960 WP_000301460.1 type II secretion system minor pseudopilin GspK -
  LO010_RS10575 xcpW 2222904..2223605 (-) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LO010_RS10580 xcpV 2223605..2223985 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  LO010_RS10585 - 2223975..2224529 (-) 555 WP_000841367.1 type II secretion system protein -
  LO010_RS10590 - 2224539..2225147 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  LO010_RS10595 - 2225185..2225958 (-) 774 WP_000497304.1 TatD family hydrolase -
  LO010_RS10600 - 2225976..2226317 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  LO010_RS10605 - 2226329..2227309 (-) 981 WP_001075408.1 DNA polymerase III subunit delta' -
  LO010_RS10610 kdsB 2227321..2228082 (-) 762 WP_000680702.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26613.59 Da        Isoelectric Point: 9.5501

>NTDB_id=628881 LO010_RS10575 WP_000594572.1 2222904..2223605(-) (xcpW) [Acinetobacter baumannii strain DB053]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=628881 LO010_RS10575 WP_000594572.1 2222904..2223605(-) (xcpW) [Acinetobacter baumannii strain DB053]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009IN88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.142

100

0.991