Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LO010_RS08290 Genome accession   NZ_CP087335
Coordinates   1748580..1749629 (-) Length   349 a.a.
NCBI ID   WP_000344167.1    Uniprot ID   A0A009SQ18
Organism   Acinetobacter baumannii strain DB053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1743580..1754629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO010_RS08255 - 1743822..1744325 (+) 504 WP_001037943.1 OmpH family outer membrane protein -
  LO010_RS08260 lpxD 1744330..1745400 (+) 1071 WP_000868103.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  LO010_RS08265 fabZ 1745407..1745892 (+) 486 WP_000140523.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LO010_RS08270 lpxA 1745889..1746677 (+) 789 WP_000064876.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  LO010_RS08275 - 1746732..1747616 (-) 885 WP_001178068.1 YbgF trimerization domain-containing protein -
  LO010_RS08285 - 1748044..1748526 (-) 483 WP_000476752.1 regulatory protein RecX -
  LO010_RS08290 recA 1748580..1749629 (-) 1050 WP_000344167.1 recombinase RecA Machinery gene
  LO010_RS08295 - 1749775..1750215 (-) 441 WP_000040959.1 RNA-binding S4 domain-containing protein -
  LO010_RS08300 - 1750199..1750885 (-) 687 WP_001045481.1 HAD-IA family hydrolase -
  LO010_RS08305 - 1751057..1751416 (+) 360 WP_000798357.1 YcgJ family protein -
  LO010_RS08310 - 1751515..1751751 (+) 237 WP_000525041.1 hypothetical protein -
  LO010_RS08315 - 1751866..1752159 (+) 294 WP_032001087.1 hypothetical protein -
  LO010_RS08320 - 1752211..1752747 (-) 537 WP_032001089.1 GNAT family N-acetyltransferase -
  LO010_RS08325 gigD 1752793..1753242 (-) 450 WP_001099950.1 Lrp/AsnC family transcriptional regulator GigD -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37904.25 Da        Isoelectric Point: 4.7769

>NTDB_id=628880 LO010_RS08290 WP_000344167.1 1748580..1749629(-) (recA) [Acinetobacter baumannii strain DB053]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENNQIAEEIER
NIREQLLTTGTNGAVQIEDEEEPDLLLES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=628880 LO010_RS08290 WP_000344167.1 1748580..1749629(-) (recA) [Acinetobacter baumannii strain DB053]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGCCAAATTGAGAAGCAATTTGGTAAAAATACGGTTATGCG
TCTTGGTGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGTG
GTTTACCAAAAGGCCGTATTATCGAAATTTATGGTCCTGAATCTTCTGGTAAAACCACAATGACATTGCAAGCAATTGCT
CAATGTCAAAAATCTGGTGGTACATGTGCCTTCATTGATGCTGAGCACGCCCTAGACCCTCAATATGCACGCAAACTTGG
TGTAGATATTGATAACCTACTTGTTTCACAACCCGACAATGGTGAGCAAGCACTTGAAATTGCTGACATGCTTGTCCGTT
CAGGCGCAATTGATTTAATCGTTGTGGACTCGGTAGCTGCACTTACACCTAAAGCAGAAATCGAAGGTGAGATGGGTGAC
TCTCATATGGGTCTACAAGCGCGTCTTATGAGCCAGGCACTTCGTAAAATTACGGGTAATGCTAAACGTTCAAACTGTAT
GGTTATCTTCATTAACCAGATTCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAAACTACCACTGGTGGTAACGCTC
TTAAATTCTACGCTTCAGTTCGTTTAGATATTCGTCGTATCGGTCAAGTAAAAGAAGGCGATGAAATTGTTGGTTCAGAA
ACTAAAGTTAAAGTCGTTAAGAACAAAATGGCTCCTCCGTTTAAAGAAGCTATTTTCCAAATTCTATACGGTAAAGGTAC
TAACCAACTAGGTGAACTTGTAGATTTAGCAGTACAACAGGATATCGTACAGAAAGCTGGTGCATGGTATTCATATCAAG
GCAATAAAATTGGTCAAGGTAAAAACAATGTAATTCGCTATTTTGAAGAAAATAATCAAATAGCTGAAGAAATTGAACGT
AATATCCGTGAACAATTGCTGACTACAGGCACAAATGGTGCAGTTCAAATTGAAGATGAAGAAGAGCCAGATCTTTTATT
AGAATCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009SQ18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

100

100

1
  recA Acinetobacter baylyi ADP1

93.084

99.427

0.926
  recA Pseudomonas stutzeri DSM 10701

75.602

95.129

0.719
  recA Vibrio cholerae strain A1552

73.7

93.696

0.691
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.696

0.691
  recA Ralstonia pseudosolanacearum GMI1000

70.517

94.269

0.665
  recA Glaesserella parasuis strain SC1401

71.605

92.837

0.665
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Neisseria gonorrhoeae strain FA1090

65.517

99.713

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.808

98.281

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

94.842

0.605
  recA Helicobacter pylori strain NCTC11637

64.22

93.696

0.602
  recA Helicobacter pylori 26695

63.914

93.696

0.599
  recA Streptococcus pyogenes NZ131

58.924

100

0.596
  recA Streptococcus mitis SK321

60.411

97.708

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.883

93.41

0.587
  recA Streptococcus mitis NCTC 12261

61.963

93.41

0.579
  recA Streptococcus pneumoniae Rx1

61.963

93.41

0.579
  recA Streptococcus pneumoniae D39

61.963

93.41

0.579
  recA Streptococcus pneumoniae R6

61.963

93.41

0.579
  recA Streptococcus pneumoniae TIGR4

61.963

93.41

0.579
  recA Streptococcus mutans UA159

61.585

93.983

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.264

0.576
  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.55

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

91.977

0.539