Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LO004_RS18150 Genome accession   NZ_CP087331
Coordinates   3799871..3800731 (+) Length   286 a.a.
NCBI ID   WP_001152282.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LMG994     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3794871..3805731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS18130 secG 3795476..3795805 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  LO004_RS18135 tpiA 3795818..3796612 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  LO004_RS18140 pilB 3796903..3798615 (+) 1713 WP_001274980.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LO004_RS18145 pilC 3798645..3799871 (+) 1227 WP_000279216.1 type II secretion system F family protein Machinery gene
  LO004_RS18150 pilD 3799871..3800731 (+) 861 WP_001152282.1 A24 family peptidase Machinery gene
  LO004_RS18155 coaE 3800733..3801329 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  LO004_RS18160 - 3801326..3802240 (-) 915 WP_000075017.1 DMT family transporter -
  LO004_RS18165 rlmB 3802276..3803025 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LO004_RS18170 - 3803127..3803453 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  LO004_RS18175 - 3803530..3804840 (-) 1311 WP_000753288.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32102.60 Da        Isoelectric Point: 7.5055

>NTDB_id=628853 LO004_RS18150 WP_001152282.1 3799871..3800731(+) (pilD) [Acinetobacter baumannii strain LMG994]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQVWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLITLTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=628853 LO004_RS18150 WP_001152282.1 3799871..3800731(+) (pilD) [Acinetobacter baumannii strain LMG994]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGTTTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAACCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.252

100

0.983
  pilD Acinetobacter nosocomialis M2

97.902

100

0.979
  pilD Vibrio cholerae strain A1552

53.676

95.105

0.51
  pilD Vibrio campbellii strain DS40M4

52.399

94.755

0.497
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441