Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LO004_RS02500 Genome accession   NZ_CP087331
Coordinates   524110..524583 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain LMG994     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 519110..529583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS02475 - 519573..521678 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LO004_RS02480 - 521718..521848 (-) 131 Protein_473 hypothetical protein -
  LO004_RS02485 rpoZ 521887..522165 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LO004_RS02490 gmk 522238..522867 (-) 630 WP_000015937.1 guanylate kinase -
  LO004_RS02495 ispH 522990..523940 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LO004_RS02500 fimU 524110..524583 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LO004_RS02505 pilV 524577..525137 (+) 561 WP_100223341.1 type IV pilus modification protein PilV Machinery gene
  LO004_RS02510 pilW 525138..526139 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  LO004_RS02515 pilX 526136..526954 (+) 819 WP_000149371.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=628822 LO004_RS02500 WP_001214065.1 524110..524583(+) (fimU) [Acinetobacter baumannii strain LMG994]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=628822 LO004_RS02500 WP_001214065.1 524110..524583(+) (fimU) [Acinetobacter baumannii strain LMG994]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCATT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1