Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LO004_RS02515 Genome accession   NZ_CP087331
Coordinates   526136..526954 (+) Length   272 a.a.
NCBI ID   WP_000149371.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LMG994     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 521136..531954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS02480 - 521718..521848 (-) 131 Protein_473 hypothetical protein -
  LO004_RS02485 rpoZ 521887..522165 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LO004_RS02490 gmk 522238..522867 (-) 630 WP_000015937.1 guanylate kinase -
  LO004_RS02495 ispH 522990..523940 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LO004_RS02500 fimU 524110..524583 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LO004_RS02505 pilV 524577..525137 (+) 561 WP_100223341.1 type IV pilus modification protein PilV Machinery gene
  LO004_RS02510 pilW 525138..526139 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  LO004_RS02515 pilX 526136..526954 (+) 819 WP_000149371.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO004_RS02520 pilY1 526966..530820 (+) 3855 WP_000768945.1 PilC/PilY family type IV pilus protein Machinery gene
  LO004_RS02525 pilY2 530833..531315 (+) 483 WP_001046419.1 type IV pilin protein Machinery gene
  LO004_RS02530 pilE 531312..531737 (+) 426 WP_000788338.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28802.63 Da        Isoelectric Point: 5.6905

>NTDB_id=628825 LO004_RS02515 WP_000149371.1 526136..526954(+) (pilX) [Acinetobacter baumannii strain LMG994]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLEALQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=628825 LO004_RS02515 WP_000149371.1 526136..526954(+) (pilX) [Acinetobacter baumannii strain LMG994]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAGCTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993