Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LOZ98_RS17245 Genome accession   NZ_CP087328
Coordinates   3519158..3520018 (+) Length   286 a.a.
NCBI ID   WP_001152283.1    Uniprot ID   A0A009QK25
Organism   Acinetobacter baumannii strain OC074     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3514158..3525018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ98_RS17225 secG 3514763..3515092 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  LOZ98_RS17230 tpiA 3515105..3515899 (-) 795 WP_000016932.1 triose-phosphate isomerase -
  LOZ98_RS17235 pilB 3516190..3517902 (+) 1713 WP_001274992.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LOZ98_RS17240 pilC 3517932..3519158 (+) 1227 WP_004737924.1 type II secretion system F family protein Machinery gene
  LOZ98_RS17245 pilD 3519158..3520018 (+) 861 WP_001152283.1 A24 family peptidase Machinery gene
  LOZ98_RS17250 coaE 3520020..3520616 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  LOZ98_RS17255 - 3520613..3521527 (-) 915 WP_004737922.1 DMT family transporter -
  LOZ98_RS17260 rlmB 3521563..3522312 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LOZ98_RS17265 - 3522414..3522740 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  LOZ98_RS17270 - 3522817..3524127 (-) 1311 WP_000753283.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32144.59 Da        Isoelectric Point: 7.1041

>NTDB_id=628801 LOZ98_RS17245 WP_001152283.1 3519158..3520018(+) (pilD) [Acinetobacter baumannii strain OC074]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=628801 LOZ98_RS17245 WP_001152283.1 3519158..3520018(+) (pilD) [Acinetobacter baumannii strain OC074]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009QK25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

98.601

100

0.986
  pilD Acinetobacter baumannii D1279779

98.252

100

0.983
  pilD Vibrio cholerae strain A1552

53.676

95.105

0.51
  pilD Vibrio campbellii strain DS40M4

52.399

94.755

0.497
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441