Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   TthHC11_RS00595 Genome accession   NZ_AP019801
Coordinates   110860..111891 (-) Length   343 a.a.
NCBI ID   WP_011227816.1    Uniprot ID   Q5SLM9
Organism   Thermus thermophilus strain HC11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 105860..116891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthHC11_RS00570 (TthHC11_01080) pilD 106820..107890 (+) 1071 WP_143590212.1 A24 family peptidase Machinery gene
  TthHC11_RS00575 (TthHC11_01090) - 107928..108431 (+) 504 WP_011227820.1 DUF2939 domain-containing protein -
  TthHC11_RS00580 (TthHC11_01100) - 108445..109365 (+) 921 WP_011227819.1 nitroreductase family protein -
  TthHC11_RS00585 (TthHC11_01110) - 109319..110116 (-) 798 WP_143590214.1 C40 family peptidase -
  TthHC11_RS00590 (TthHC11_01120) - 110117..110875 (-) 759 WP_041443621.1 DUF721 domain-containing protein -
  TthHC11_RS00595 (TthHC11_01130) recF 110860..111891 (-) 1032 WP_011227816.1 DNA replication and repair protein RecF Machinery gene
  TthHC11_RS00600 (TthHC11_01140) - 111893..113065 (-) 1173 WP_011174085.1 MFS transporter -
  TthHC11_RS00605 (TthHC11_01150) pstB 113075..113890 (-) 816 WP_143590216.1 phosphate ABC transporter ATP-binding protein PstB -
  TthHC11_RS00610 (TthHC11_01160) pstA 113884..115089 (-) 1206 WP_143590218.1 phosphate ABC transporter permease PstA -
  TthHC11_RS00615 (TthHC11_01170) pstC 115082..115984 (-) 903 WP_143590220.1 phosphate ABC transporter permease subunit PstC -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37788.64 Da        Isoelectric Point: 8.9580

>NTDB_id=62879 TthHC11_RS00595 WP_011227816.1 110860..111891(-) (recF) [Thermus thermophilus strain HC11]
MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVRFGEEEAWLHAEVETELGAYR
LEHRLGPGGREVLLNGKRVSLRTLWELPGSVLVSPLDLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNAL
LKAGGEGLSAWDRELARYGDEIVALRRRFLRRFAPILREVHAALAAKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAQALPQAILA
GLEAPPGVPVCSVVRGVVLCPGA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=62879 TthHC11_RS00595 WP_011227816.1 110860..111891(-) (recF) [Thermus thermophilus strain HC11]
ATGCGGCTTCTCCTCTTCCGGCAACGGAACTTCCGCAACCTGGCCCTGGAGGCCTACCGCCCCCCGCCGGGCCTTTCCGC
CCTGGTGGGGGCCAACGCCCAGGGGAAGACGAGCCTCCTCCTGGGGATCCACCTGGCCCTAGGGGGGGAGGTCCCCCTGG
GCCTTGCCGACCTCGTCCGCTTCGGGGAGGAGGAGGCCTGGCTCCACGCCGAGGTGGAGACGGAGCTCGGGGCCTACCGC
CTGGAACACCGCCTGGGCCCCGGGGGGCGGGAGGTCCTCCTCAACGGGAAGCGGGTGAGCCTTCGGACCCTTTGGGAGCT
TCCCGGCTCGGTCCTCGTCTCCCCTCTGGACCTCGAGGCGGTCCTCGGGCCCAAGGAGGAGCGGCGGGCCTACCTGGACC
GGCTCATCGCCCGCTTCTCCCGCCGCTACGCCGCCCTCCTTTCCGCCTACGAGAAGGCGCTGCGCCAGCGGAACGCCCTC
CTCAAGGCCGGGGGGGAGGGCCTTTCCGCCTGGGACCGGGAGCTCGCCCGCTACGGGGACGAGATCGTGGCCCTGAGGCG
CCGCTTCCTCCGGCGCTTCGCCCCCATCCTGCGGGAGGTCCACGCCGCCCTCGCCGCCAAGGAGGCGGGGCTTCGCTTGG
AGGAGACCGCGGGGGAAGGGGTGCTCCGGGCCCTCGAGGCCAGCCGGGCCGAGGAGCGGGAGCGGGGCCAGACCCTGGTG
GGGCCCCACCGGGACGACCTGGTCTTCCTCCTGGAGGGGCGGCCCGCCCACCGGTTCGCCAGCCGCGGGGAGGCCAAGAC
CCTGGCCCTGGCCCTGCGCCTCGCCGAGCACCGCCTCCTCGGCGAGCACCACGGCGAGCCCCCCCTCCTCCTCGTGGACG
AGTGGGGGGAGGAGCTGGACGAGGCCCGCAGGCGGGCCGTCCTCGCCTACGCCCAGGCCCTGCCCCAGGCCATCCTGGCG
GGGCTGGAAGCCCCCCCGGGGGTGCCGGTATGCTCGGTGGTACGAGGGGTGGTCCTGTGCCCTGGCGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZWU
  PDB 8A8J
  PDB 8A93
  PDB 8BPR

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.136

98.251

0.414

Multiple sequence alignment