Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LOZ98_RS01665 Genome accession   NZ_CP087328
Coordinates   346876..347349 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain OC074     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341876..352349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ98_RS01640 - 342339..344444 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LOZ98_RS01645 - 344484..344614 (-) 131 Protein_314 hypothetical protein -
  LOZ98_RS01650 rpoZ 344653..344931 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LOZ98_RS01655 gmk 345004..345633 (-) 630 WP_000015937.1 guanylate kinase -
  LOZ98_RS01660 ispH 345756..346706 (+) 951 WP_004742164.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LOZ98_RS01665 fimU 346876..347349 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LOZ98_RS01670 pilV 347343..347903 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LOZ98_RS01675 pilW 347904..348905 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  LOZ98_RS01680 pilX 348902..349720 (+) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=628771 LOZ98_RS01665 WP_001214065.1 346876..347349(+) (fimU) [Acinetobacter baumannii strain OC074]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=628771 LOZ98_RS01665 WP_001214065.1 346876..347349(+) (fimU) [Acinetobacter baumannii strain OC074]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1