Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LOZ98_RS01680 Genome accession   NZ_CP087328
Coordinates   348902..349720 (+) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain OC074     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343902..354720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ98_RS01645 - 344484..344614 (-) 131 Protein_314 hypothetical protein -
  LOZ98_RS01650 rpoZ 344653..344931 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LOZ98_RS01655 gmk 345004..345633 (-) 630 WP_000015937.1 guanylate kinase -
  LOZ98_RS01660 ispH 345756..346706 (+) 951 WP_004742164.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LOZ98_RS01665 fimU 346876..347349 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LOZ98_RS01670 pilV 347343..347903 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LOZ98_RS01675 pilW 347904..348905 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  LOZ98_RS01680 pilX 348902..349720 (+) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LOZ98_RS01685 pilY1 349732..353586 (+) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  LOZ98_RS01690 pilY2 353599..354081 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  LOZ98_RS01695 pilE 354078..354503 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=628774 LOZ98_RS01680 WP_000149376.1 348902..349720(+) (pilX) [Acinetobacter baumannii strain OC074]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=628774 LOZ98_RS01680 WP_000149376.1 348902..349720(+) (pilX) [Acinetobacter baumannii strain OC074]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989