Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LOZ98_RS01555 Genome accession   NZ_CP087328
Coordinates   321585..322112 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain OC074     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316585..327112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ98_RS01540 pilM 319138..320196 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LOZ98_RS01545 pilN 320196..320837 (+) 642 WP_004742152.1 PilN domain-containing protein Machinery gene
  LOZ98_RS01550 pilO 320834..321574 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  LOZ98_RS01555 pilP 321585..322112 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LOZ98_RS01560 pilQ 322175..324340 (+) 2166 WP_004742153.1 type IV pilus secretin PilQ family protein Machinery gene
  LOZ98_RS01565 aroK 324352..324921 (+) 570 WP_000643712.1 shikimate kinase AroK -
  LOZ98_RS01570 aroB 324950..326032 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  LOZ98_RS01575 - 326048..326923 (+) 876 WP_004742154.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=628768 LOZ98_RS01555 WP_000695065.1 321585..322112(+) (pilP) [Acinetobacter baumannii strain OC074]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=628768 LOZ98_RS01555 WP_000695065.1 321585..322112(+) (pilP) [Acinetobacter baumannii strain OC074]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCGCAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCTCTTGAAGCTTTAAATATGAAAGGGAGCATGCG
AAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714