Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LOZ98_RS01545 Genome accession   NZ_CP087328
Coordinates   320196..320837 (+) Length   213 a.a.
NCBI ID   WP_004742152.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC074     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 315196..325837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ98_RS01525 - 315243..315575 (+) 333 WP_000169599.1 hypothetical protein -
  LOZ98_RS01530 - 315578..316402 (+) 825 WP_004742150.1 putative RNA methyltransferase -
  LOZ98_RS01535 ponA 316420..318975 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  LOZ98_RS01540 pilM 319138..320196 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LOZ98_RS01545 pilN 320196..320837 (+) 642 WP_004742152.1 PilN domain-containing protein Machinery gene
  LOZ98_RS01550 pilO 320834..321574 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  LOZ98_RS01555 pilP 321585..322112 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LOZ98_RS01560 pilQ 322175..324340 (+) 2166 WP_004742153.1 type IV pilus secretin PilQ family protein Machinery gene
  LOZ98_RS01565 aroK 324352..324921 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24059.46 Da        Isoelectric Point: 5.3968

>NTDB_id=628766 LOZ98_RS01545 WP_004742152.1 320196..320837(+) (pilN) [Acinetobacter baumannii strain OC074]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDFAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=628766 LOZ98_RS01545 WP_004742152.1 320196..320837(+) (pilN) [Acinetobacter baumannii strain OC074]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTTTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

98.592

100

0.986
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704