Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   LO013_RS02065 Genome accession   NZ_CP087325
Coordinates   434439..434921 (+) Length   160 a.a.
NCBI ID   WP_001046423.1    Uniprot ID   A0A9E9MD39
Organism   Acinetobacter baumannii strain OC073     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429439..439921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO013_RS02055 pilX 429742..430560 (+) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO013_RS02060 pilY1 430572..434426 (+) 3855 WP_258578342.1 PilC/PilY family type IV pilus protein Machinery gene
  LO013_RS02065 pilY2 434439..434921 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  LO013_RS02070 pilE 434918..435343 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene
  LO013_RS02075 rpsP 435490..435741 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  LO013_RS02080 rimM 435761..436309 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  LO013_RS02085 trmD 436355..437095 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LO013_RS02090 rplS 437303..437671 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  LO013_RS02095 - 437724..438665 (-) 942 WP_086321537.1 triacylglycerol lipase -
  LO013_RS02100 - 438780..439811 (-) 1032 WP_001189457.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17575.84 Da        Isoelectric Point: 8.4834

>NTDB_id=628728 LO013_RS02065 WP_001046423.1 434439..434921(+) (pilY2) [Acinetobacter baumannii strain OC073]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAVKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=628728 LO013_RS02065 WP_001046423.1 434439..434921(+) (pilY2) [Acinetobacter baumannii strain OC073]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGTTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGAACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419