Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   LO013_RS01920 Genome accession   NZ_CP087325
Coordinates   402100..402840 (+) Length   246 a.a.
NCBI ID   WP_000081156.1    Uniprot ID   A0A009SCU3
Organism   Acinetobacter baumannii strain OC073     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 397100..407840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO013_RS01905 ponA 397686..400241 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  LO013_RS01910 pilM 400404..401462 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LO013_RS01915 pilN 401462..402103 (+) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  LO013_RS01920 pilO 402100..402840 (+) 741 WP_000081156.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO013_RS01925 pilP 402851..403378 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LO013_RS01930 pilQ 403441..405606 (+) 2166 WP_258578338.1 type IV pilus secretin PilQ family protein Machinery gene
  LO013_RS01935 aroK 405618..406187 (+) 570 WP_000643712.1 shikimate kinase AroK -
  LO013_RS01940 aroB 406216..407298 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27818.60 Da        Isoelectric Point: 4.9608

>NTDB_id=628720 LO013_RS01920 WP_000081156.1 402100..402840(+) (pilO) [Acinetobacter baumannii strain OC073]
MSQNELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=628720 LO013_RS01920 WP_000081156.1 402100..402840(+) (pilO) [Acinetobacter baumannii strain OC073]
ATGAGTCAAAACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009SCU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679