Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LO013_RS02040 Genome accession   NZ_CP087325
Coordinates   427716..428189 (+) Length   157 a.a.
NCBI ID   WP_001214064.1    Uniprot ID   A0A0J8UYN3
Organism   Acinetobacter baumannii strain OC073     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 422716..433189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO013_RS02015 - 423179..425284 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LO013_RS02020 - 425324..425454 (-) 131 Protein_389 hypothetical protein -
  LO013_RS02025 rpoZ 425493..425771 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LO013_RS02030 gmk 425844..426473 (-) 630 WP_000015939.1 guanylate kinase -
  LO013_RS02035 ispH 426596..427546 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LO013_RS02040 fimU 427716..428189 (+) 474 WP_001214064.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LO013_RS02045 pilV 428183..428743 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  LO013_RS02050 pilW 428744..429745 (+) 1002 WP_057050390.1 PilW family protein Machinery gene
  LO013_RS02055 pilX 429742..430560 (+) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16850.43 Da        Isoelectric Point: 8.5355

>NTDB_id=628723 LO013_RS02040 WP_001214064.1 427716..428189(+) (fimU) [Acinetobacter baumannii strain OC073]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=628723 LO013_RS02040 WP_001214064.1 427716..428189(+) (fimU) [Acinetobacter baumannii strain OC073]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8UYN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994