Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LO002_RS17500 Genome accession   NZ_CP087321
Coordinates   3615315..3615788 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain OC043     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3610315..3620788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO002_RS17485 pilX 3612944..3613762 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO002_RS17490 pilW 3613759..3614760 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  LO002_RS17495 pilV 3614761..3615321 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  LO002_RS17500 fimU 3615315..3615788 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LO002_RS17505 ispH 3615958..3616908 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LO002_RS17510 gmk 3617031..3617660 (+) 630 WP_000015937.1 guanylate kinase -
  LO002_RS17515 rpoZ 3617733..3618011 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LO002_RS17520 - 3618050..3618179 (+) 130 Protein_3413 hypothetical protein -
  LO002_RS17525 - 3618219..3620324 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=628709 LO002_RS17500 WP_001214061.1 3615315..3615788(-) (fimU) [Acinetobacter baumannii strain OC043]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=628709 LO002_RS17500 WP_001214061.1 3615315..3615788(-) (fimU) [Acinetobacter baumannii strain OC043]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987