Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LO002_RS17470 Genome accession   NZ_CP087321
Coordinates   3608161..3608586 (-) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain OC043     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3603161..3613586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO002_RS17440 - 3603689..3604723 (+) 1035 WP_001189447.1 lipase secretion chaperone -
  LO002_RS17445 - 3604838..3605779 (+) 942 WP_085916958.1 triacylglycerol lipase -
  LO002_RS17450 rplS 3605832..3606200 (-) 369 WP_000014561.1 50S ribosomal protein L19 -
  LO002_RS17455 trmD 3606409..3607149 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LO002_RS17460 rimM 3607195..3607743 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  LO002_RS17465 rpsP 3607763..3608014 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  LO002_RS17470 pilE 3608161..3608586 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  LO002_RS17475 pilY2 3608583..3609065 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  LO002_RS17480 pilY1 3609078..3612932 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=628703 LO002_RS17470 WP_000788342.1 3608161..3608586(-) (pilE) [Acinetobacter baumannii strain OC043]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=628703 LO002_RS17470 WP_000788342.1 3608161..3608586(-) (pilE) [Acinetobacter baumannii strain OC043]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518