Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FPG73_RS08530 Genome accession   NZ_AP019794
Coordinates   1597436..1598020 (+) Length   194 a.a.
NCBI ID   WP_014629118.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA2-29     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1592436..1603020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPG73_RS08510 (TthAA229_16640) - 1593159..1594874 (+) 1716 WP_143586439.1 hypothetical protein -
  FPG73_RS08515 (TthAA229_16650) - 1594917..1596110 (+) 1194 WP_143586441.1 MFS transporter -
  FPG73_RS08520 (TthAA229_16660) hemB 1596107..1597087 (-) 981 WP_172619205.1 porphobilinogen synthase -
  FPG73_RS08525 (TthAA229_16670) - 1597118..1597435 (+) 318 WP_008633232.1 YbaB/EbfC family nucleoid-associated protein -
  FPG73_RS08530 (TthAA229_16680) recR 1597436..1598020 (+) 585 WP_014629118.1 recombination mediator RecR Machinery gene
  FPG73_RS08535 (TthAA229_16690) - 1598022..1598405 (+) 384 WP_143586446.1 hypothetical protein -
  FPG73_RS08540 (TthAA229_16700) - 1598393..1598734 (+) 342 WP_011173642.1 roadblock/LC7 domain-containing protein -
  FPG73_RS08545 (TthAA229_16710) - 1598719..1599057 (+) 339 WP_060384182.1 roadblock/LC7 domain-containing protein -
  FPG73_RS08550 (TthAA229_16720) - 1599054..1599320 (+) 267 WP_008633236.1 DUF3467 domain-containing protein -
  FPG73_RS08555 (TthAA229_16730) - 1599381..1601186 (-) 1806 WP_172619206.1 S9 family peptidase -
  FPG73_RS08560 (TthAA229_16740) - 1601254..1601982 (+) 729 WP_143586450.1 Nif3-like dinuclear metal center hexameric protein -
  FPG73_RS08565 (TthAA229_16750) tmk 1601983..1602579 (+) 597 WP_143586452.1 dTMP kinase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21179.33 Da        Isoelectric Point: 5.0317

>NTDB_id=62864 FPG73_RS08530 WP_014629118.1 1597436..1598020(+) (recR) [Thermus thermophilus strain AA2-29]
MRYPESLLKLTRALSRLPGIGPKTAQRLALHLAFHKEEAEALAEALEGLKRVQACRECGNLAEGELCPICQDEDRDRSLL
AVVESVADLYALERSGEFRGLYHVLGGALNPLEGIGPKELNLEGLFRRLEGVEEVVLATSMTVEGEATALYLAEELKKRG
VRVTRPAYGLPVGGSLEYADEVTLGRALEGRRPV

Nucleotide


Download         Length: 585 bp        

>NTDB_id=62864 FPG73_RS08530 WP_014629118.1 1597436..1598020(+) (recR) [Thermus thermophilus strain AA2-29]
ATGCGCTACCCGGAAAGCCTCCTCAAGCTCACCCGGGCCCTCTCCCGCCTCCCCGGCATAGGCCCCAAGACGGCCCAGCG
CCTGGCCCTCCACCTCGCCTTCCACAAGGAGGAGGCCGAGGCCCTGGCGGAGGCCCTGGAGGGGCTCAAGCGGGTCCAGG
CCTGCCGCGAGTGCGGCAACCTGGCCGAGGGGGAGCTCTGCCCCATCTGCCAGGACGAGGACCGGGACCGCTCCCTCCTC
GCCGTGGTGGAGAGCGTGGCCGACCTGTACGCCCTGGAGCGGAGCGGGGAGTTCCGGGGCCTCTACCACGTCCTGGGAGG
GGCCTTGAACCCCCTGGAGGGCATCGGCCCCAAGGAGCTCAACCTGGAGGGTCTCTTCCGGCGGCTGGAAGGCGTGGAGG
AGGTGGTCCTCGCCACCTCCATGACCGTGGAGGGGGAGGCCACCGCCCTCTACCTCGCCGAGGAGCTGAAGAAGCGGGGG
GTGCGGGTGACCCGGCCCGCCTACGGCCTCCCCGTGGGGGGGAGCCTGGAGTACGCCGACGAGGTGACCCTGGGCCGGGC
CCTGGAGGGGAGGCGGCCCGTCTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-76)

Toprim domain (Toprim_4)

(80-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.102

100

0.557
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

100

0.49
  recR Streptococcus pneumoniae R6

45.128

100

0.454

Multiple sequence alignment