Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LO012_RS01805 Genome accession   NZ_CP087317
Coordinates   351133..351660 (+) Length   175 a.a.
NCBI ID   WP_000695059.1    Uniprot ID   A0A0D5YDP9
Organism   Acinetobacter baumannii strain OC064     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346133..356660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO012_RS01780 pilM 347497..348555 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LO012_RS01785 - 348555..348686 (+) 132 Protein_334 PilN domain-containing protein -
  LO012_RS01795 - 349879..350385 (+) 507 Protein_336 PilN domain-containing protein -
  LO012_RS01800 pilO 350382..351122 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO012_RS01805 pilP 351133..351660 (+) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  LO012_RS01810 pilQ 351723..353888 (+) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  LO012_RS01815 aroK 353900..354469 (+) 570 WP_000643712.1 shikimate kinase AroK -
  LO012_RS01820 aroB 354498..355580 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  LO012_RS01825 - 355596..356471 (+) 876 WP_000218810.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19371.59 Da        Isoelectric Point: 9.0270

>NTDB_id=628628 LO012_RS01805 WP_000695059.1 351133..351660(+) (pilP) [Acinetobacter baumannii strain OC064]
MKIKQITLCVLASVVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=628628 LO012_RS01805 WP_000695059.1 351133..351660(+) (pilP) [Acinetobacter baumannii strain OC064]
ATGAAAATTAAGCAAATTACTCTTTGTGTTTTGGCGAGTGTTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTTGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATCACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YDP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.286

100

0.983
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714