Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LO005_RS16770 Genome accession   NZ_CP087309
Coordinates   3501224..3502084 (+) Length   286 a.a.
NCBI ID   WP_029423718.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3496224..3507084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO005_RS16750 secG 3496829..3497158 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  LO005_RS16755 tpiA 3497171..3497965 (-) 795 WP_029423716.1 triose-phosphate isomerase -
  LO005_RS16760 pilB 3498256..3499968 (+) 1713 WP_001274991.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LO005_RS16765 pilC 3499998..3501224 (+) 1227 WP_029423717.1 type II secretion system F family protein Machinery gene
  LO005_RS16770 pilD 3501224..3502084 (+) 861 WP_029423718.1 A24 family peptidase Machinery gene
  LO005_RS16775 coaE 3502086..3502682 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  LO005_RS16780 - 3502679..3503593 (-) 915 WP_000075015.1 DMT family transporter -
  LO005_RS16785 rlmB 3503629..3504378 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LO005_RS16790 - 3504480..3504806 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  LO005_RS16795 - 3504883..3506193 (-) 1311 WP_002055139.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32112.50 Da        Isoelectric Point: 7.1041

>NTDB_id=628564 LO005_RS16770 WP_029423718.1 3501224..3502084(+) (pilD) [Acinetobacter baumannii strain OC068]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMFFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=628564 LO005_RS16770 WP_029423718.1 3501224..3502084(+) (pilD) [Acinetobacter baumannii strain OC068]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCGTCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGTTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGTATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

97.902

100

0.979
  pilD Acinetobacter nosocomialis M2

97.552

100

0.976
  pilD Vibrio cholerae strain A1552

53.506

94.755

0.507
  pilD Vibrio campbellii strain DS40M4

52.03

94.755

0.493
  pilD Neisseria gonorrhoeae MS11

46.591

92.308

0.43