Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   LOZ96_RS10325 Genome accession   NZ_CP087304
Coordinates   2134944..2135324 (-) Length   126 a.a.
NCBI ID   WP_000836914.1    Uniprot ID   A0A098SJS3
Organism   Acinetobacter baumannii strain OC081     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2129944..2140324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ96_RS10295 tadA 2130063..2130566 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  LOZ96_RS10300 - 2130573..2131697 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  LOZ96_RS10305 ung 2131694..2132407 (-) 714 WP_001177527.1 uracil-DNA glycosylase -
  LOZ96_RS10310 - 2132458..2133054 (-) 597 WP_000908449.1 6-carboxytetrahydropterin synthase -
  LOZ96_RS10315 gspK 2133284..2134243 (-) 960 WP_072292244.1 type II secretion system minor pseudopilin GspK -
  LOZ96_RS10320 xcpW 2134243..2134944 (-) 702 WP_000594579.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LOZ96_RS10325 xcpV 2134944..2135324 (-) 381 WP_000836914.1 type II secretion system minor pseudopilin GspI Machinery gene
  LOZ96_RS10330 - 2135314..2135868 (-) 555 WP_000841373.1 type II secretion system protein -
  LOZ96_RS10335 - 2135878..2136486 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  LOZ96_RS10340 - 2136524..2137297 (-) 774 WP_000497300.1 TatD family hydrolase -
  LOZ96_RS10345 - 2137315..2137656 (-) 342 WP_001183027.1 PilZ domain-containing protein -
  LOZ96_RS10350 - 2137668..2138648 (-) 981 WP_258579919.1 DNA polymerase III subunit delta' -
  LOZ96_RS10355 kdsB 2138660..2139421 (-) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14074.34 Da        Isoelectric Point: 10.0341

>NTDB_id=628501 LOZ96_RS10325 WP_000836914.1 2134944..2135324(-) (xcpV) [Acinetobacter baumannii strain OC081]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKRKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=628501 LOZ96_RS10325 WP_000836914.1 2134944..2135324(-) (xcpV) [Acinetobacter baumannii strain OC081]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATC
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGAG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098SJS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992