Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   LOZ96_RS10320 Genome accession   NZ_CP087304
Coordinates   2134243..2134944 (-) Length   233 a.a.
NCBI ID   WP_000594579.1    Uniprot ID   A0A0D5YJA0
Organism   Acinetobacter baumannii strain OC081     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2129243..2139944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ96_RS10290 - 2129550..2129993 (-) 444 WP_001246675.1 SRPBCC family protein -
  LOZ96_RS10295 tadA 2130063..2130566 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  LOZ96_RS10300 - 2130573..2131697 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  LOZ96_RS10305 ung 2131694..2132407 (-) 714 WP_001177527.1 uracil-DNA glycosylase -
  LOZ96_RS10310 - 2132458..2133054 (-) 597 WP_000908449.1 6-carboxytetrahydropterin synthase -
  LOZ96_RS10315 gspK 2133284..2134243 (-) 960 WP_072292244.1 type II secretion system minor pseudopilin GspK -
  LOZ96_RS10320 xcpW 2134243..2134944 (-) 702 WP_000594579.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LOZ96_RS10325 xcpV 2134944..2135324 (-) 381 WP_000836914.1 type II secretion system minor pseudopilin GspI Machinery gene
  LOZ96_RS10330 - 2135314..2135868 (-) 555 WP_000841373.1 type II secretion system protein -
  LOZ96_RS10335 - 2135878..2136486 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  LOZ96_RS10340 - 2136524..2137297 (-) 774 WP_000497300.1 TatD family hydrolase -
  LOZ96_RS10345 - 2137315..2137656 (-) 342 WP_001183027.1 PilZ domain-containing protein -
  LOZ96_RS10350 - 2137668..2138648 (-) 981 WP_258579919.1 DNA polymerase III subunit delta' -
  LOZ96_RS10355 kdsB 2138660..2139421 (-) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26707.66 Da        Isoelectric Point: 9.5501

>NTDB_id=628500 LOZ96_RS10320 WP_000594579.1 2134243..2134944(-) (xcpW) [Acinetobacter baumannii strain OC081]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=628500 LOZ96_RS10320 WP_000594579.1 2134243..2134944(-) (xcpW) [Acinetobacter baumannii strain OC081]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YJA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

98.283

100

0.983