Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LOZ96_RS01570 Genome accession   NZ_CP087304
Coordinates   337236..337709 (+) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii strain OC081     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332236..342709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ96_RS01545 - 332699..334804 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LOZ96_RS01550 - 334844..334974 (-) 131 Protein_296 hypothetical protein -
  LOZ96_RS01555 rpoZ 335013..335291 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LOZ96_RS01560 gmk 335364..335993 (-) 630 WP_000015937.1 guanylate kinase -
  LOZ96_RS01565 ispH 336116..337066 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LOZ96_RS01570 fimU 337236..337709 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LOZ96_RS01575 pilV 337703..338263 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LOZ96_RS01580 pilW 338264..339265 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  LOZ96_RS01585 pilX 339262..340080 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=628485 LOZ96_RS01570 WP_001214060.1 337236..337709(+) (fimU) [Acinetobacter baumannii strain OC081]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=628485 LOZ96_RS01570 WP_001214060.1 337236..337709(+) (fimU) [Acinetobacter baumannii strain OC081]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987