Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LOZ96_RS01575 Genome accession   NZ_CP087304
Coordinates   337703..338263 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC081     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332703..343263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ96_RS01550 - 334844..334974 (-) 131 Protein_296 hypothetical protein -
  LOZ96_RS01555 rpoZ 335013..335291 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LOZ96_RS01560 gmk 335364..335993 (-) 630 WP_000015937.1 guanylate kinase -
  LOZ96_RS01565 ispH 336116..337066 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LOZ96_RS01570 fimU 337236..337709 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LOZ96_RS01575 pilV 337703..338263 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LOZ96_RS01580 pilW 338264..339265 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  LOZ96_RS01585 pilX 339262..340080 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=628486 LOZ96_RS01575 WP_002194578.1 337703..338263(+) (pilV) [Acinetobacter baumannii strain OC081]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=628486 LOZ96_RS01575 WP_002194578.1 337703..338263(+) (pilV) [Acinetobacter baumannii strain OC081]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGTTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414