Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   LO014_RS08600 Genome accession   NZ_CP087300
Coordinates   1714343..1715044 (+) Length   233 a.a.
NCBI ID   WP_000594581.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC061     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1709343..1720044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO014_RS08565 kdsB 1709866..1710627 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO014_RS08570 - 1710639..1711619 (+) 981 WP_001075412.1 DNA polymerase III subunit delta' -
  LO014_RS08575 - 1711631..1711972 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  LO014_RS08580 - 1711990..1712763 (+) 774 WP_000497302.1 TatD family hydrolase -
  LO014_RS08585 - 1712801..1713409 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  LO014_RS08590 - 1713419..1713973 (+) 555 WP_002057406.1 type II secretion system protein -
  LO014_RS08595 xcpV 1713963..1714343 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  LO014_RS08600 xcpW 1714343..1715044 (+) 702 WP_000594581.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LO014_RS08605 gspK 1715044..1716003 (+) 960 WP_258584220.1 type II secretion system minor pseudopilin GspK -
  LO014_RS08610 - 1716233..1716829 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  LO014_RS08615 ung 1716880..1717593 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  LO014_RS08620 - 1717590..1718714 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  LO014_RS08625 tadA 1718721..1719224 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  LO014_RS08630 - 1719294..1719737 (+) 444 WP_002057383.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26731.68 Da        Isoelectric Point: 9.3468

>NTDB_id=628456 LO014_RS08600 WP_000594581.1 1714343..1715044(+) (xcpW) [Acinetobacter baumannii strain OC061]
MIKNKYIHIRSFSSRLAERSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=628456 LO014_RS08600 WP_000594581.1 1714343..1715044(+) (xcpW) [Acinetobacter baumannii strain OC061]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGAACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAAATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

98.283

100

0.983