Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LO009_RS16865 Genome accession   NZ_CP087298
Coordinates   3521174..3521809 (+) Length   211 a.a.
NCBI ID   WP_075399905.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC070     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3516174..3526809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO009_RS16850 adeT2 3517234..3518220 (-) 987 WP_024436494.1 putative multidrug efflux protein AdeT2 -
  LO009_RS16855 - 3518300..3519115 (-) 816 WP_138149411.1 NAD-dependent epimerase/dehydratase family protein -
  LO009_RS16860 recG 3519136..3521181 (+) 2046 WP_138149413.1 ATP-dependent DNA helicase RecG -
  LO009_RS16865 comF 3521174..3521809 (+) 636 WP_075399905.1 ComF family protein Machinery gene
  LO009_RS16870 - 3521812..3522213 (-) 402 WP_000849705.1 NUDIX domain-containing protein -
  LO009_RS16875 - 3522228..3522809 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  LO009_RS16880 - 3522967..3523980 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  LO009_RS16885 - 3524050..3524337 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  LO009_RS16890 - 3524349..3524990 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  LO009_RS16895 - 3525017..3525697 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LO009_RS16900 mlaE 3525697..3526473 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24571.74 Da        Isoelectric Point: 9.7140

>NTDB_id=628423 LO009_RS16865 WP_075399905.1 3521174..3521809(+) (comF) [Acinetobacter baumannii strain OC070]
MFKFLTPQYLFHLLSPCLLCEIGTREKYPLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=628423 LO009_RS16865 WP_075399905.1 3521174..3521809(+) (comF) [Acinetobacter baumannii strain OC070]
ATGTTTAAGTTTTTAACCCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATCCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGACCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

98.578

100

0.986
  comF Acinetobacter baumannii D1279779

97.63

100

0.976